Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0738
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical pr...    33   0.30 
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    29   4.9  

>Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical
           protein T09E8.1d protein.
          Length = 547

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 79  FFAEMSSR--GQGNDTNDLKG*CMRQSFVLPPELKIIDSLHQLVETMSRSTNRSSPIKSP 252
           F+ +M  R  G G+ T+D  G        LPP  + + S H  +ET+S S+   +   SP
Sbjct: 13  FYTKMIERLTGGGSPTSDQNGNSHHHHHHLPPAPRHLSSSHHQIETISGSSKLRAQSGSP 72

Query: 253 KLS 261
            L+
Sbjct: 73  ALN 75


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical protein
            C18C4.5a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 175  KIIDSLHQLVETMSRSTNRSSPIKSPKLSLDTILN 279
            K +D L   VET  R    S+PI  P+ +  TI N
Sbjct: 944  KQVDELQSQVETAERKLKSSTPIAPPRSNTRTISN 978


>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/78 (24%), Positives = 29/78 (37%)
 Frame = +3

Query: 297 NYANSMESEVVKYLIEFRQECFYGAFFFKDCKCTYI*IFCKVFSSVFVSIHNKTYFLRSN 476
           N  N +  +V  Y ++     F   F  +  +  YI  F   F+  F   H KT F    
Sbjct: 223 NTNNCLLKDVDLYTVKIEDLTFKSDFKLRCTRSDYIQAFVTFFTVEFSKCHKKTGFSTGP 282

Query: 477 NLXXXXXXXXXXYIKDYL 530
           ++          Y+KD L
Sbjct: 283 DVQYTHWKQTVFYLKDAL 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,336,722
Number of Sequences: 27780
Number of extensions: 329894
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)