Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0738
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.3  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 471 TVKNRFYYGYSRKPKKILYKIFKCTYIYNL*KKRHHKNIPA*T 343
           T    FY+ +      +L+   +CT+I    K+ H  NI A T
Sbjct: 98  TALGNFYFVHESLKNVLLWDFQECTFISVNGKEVHSGNIEAVT 140


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 480 NY*TVKNRFYYGYSRKPKKILYKIFKCTYIYNL 382
           NY    N + Y Y+   KK+ YK     YI N+
Sbjct: 321 NYNYNNNNYKYNYNNYNKKLYYK----NYIINI 349


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 461 IGFIMDTHENRRKYFTKY-LNV 399
           +G+++D++ N  K +TK  LNV
Sbjct: 339 LGYVVDSYGNHVKLYTKQGLNV 360


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 461 IGFIMDTHENRRKYFTKY-LNV 399
           +G+++D++ N  K +TK  LNV
Sbjct: 339 LGYVVDSYGNHVKLYTKQGLNV 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,312
Number of Sequences: 438
Number of extensions: 4557
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)