Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0738
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48910.1 68416.m05343 expressed protein                             30   2.0  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    28   6.0  
At5g25130.1 68418.m02977 cytochrome P450 family protein CYTOCHRO...    28   7.9  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    28   7.9  

>At3g48910.1 68416.m05343 expressed protein 
          Length = 224

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 151 SFVLPPELKIIDSLHQLVETMSRSTNRS-SPIKSPKLSLDTILNTQQS*T 297
           SF L PE ++ID +    E  SRS +RS    KS    L+T++    S T
Sbjct: 150 SFPLYPETEVIDLISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSET 199


>At4g38780.1 68417.m05491 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 551 HFIIPAISNVIYSWQ*ILNSNVFYIIKNGFLFYNSVIWLLTTIF 682
           H +   + N+   W+ + +  V Y I     F N V W++  I+
Sbjct: 92  HAVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEVRWVVEPIY 135


>At5g25130.1 68418.m02977 cytochrome P450 family protein CYTOCHROME
           P450 71B1 - Thlaspi arvense, EMBL:L24438
          Length = 496

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 163 PPELKIIDSLHQLVETMSRSTNRSSPIKSPKLSL 264
           PP L II +LHQL     RS  + S    P +SL
Sbjct: 33  PPRLPIIGNLHQLGSKPHRSMFKLSETYGPLMSL 66


>At1g80070.1 68414.m09373 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +2

Query: 551 HFIIPAISNVIYSWQ*ILNSNVFYIIKNGFLFYNSVIWLLTTIF 682
           H +   + N+   W+ + +  V Y I     F N + W++  I+
Sbjct: 144 HAVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIY 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,886,049
Number of Sequences: 28952
Number of extensions: 284980
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)