Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0737
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.3  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    28   1.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   4.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   4.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   9.4  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   9.4  

>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 87

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 726 TWMTHLVHSNNIFNFHIS 779
           +W  HL+H  NIF+F IS
Sbjct: 56  SWSRHLIHGINIFSFSIS 73


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 212 GSCGTGKFPLITTM-KQELSDYKVKLEYDGPY 304
           G  G+GK  LI T+    L D K +L+Y  PY
Sbjct: 39  GPSGSGKSTLINTLFSAHLMDSKGRLDYQAPY 70


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 207 KSSMSTDQTMIPPNPSSFSQAIFVLSDLSSSNPTH 103
           K   ST+Q  I  NPS ++ A+  L+ L   + T+
Sbjct: 146 KEEWSTEQYEIAENPSGYASALHTLTQLDDGSETN 180


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 204 SSMSTDQTMIPPNPSSFSQAIFVLSDLSSSNPTHWSPR*ANGTICSLSQTS 52
           SS+S+  +    + SS S +I   S  SSS+PT  S   ++ +  S S TS
Sbjct: 252 SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTS 302


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 561 AYRLAGGACVWCAHPSTFSGQSQTFSLGLNTRLEGHGMWCFRSPSHM*YMVQSAWSLWY 385
           AY+LAG +    AHP  +    + + + L+T L+   M+ F +P+    +  S   LW+
Sbjct: 58  AYKLAGISNEHPAHPQNWGWWKKAYIVLLSTSLQ---MYVFWTPNFYPGVQDSVMELWH 113


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
 Frame = +2

Query: 188 SVDMDDFRG--SCG-TGKFPLITTMKQELSDYKVKLEYDGPYETVLTSGQYTTKDPTEVT 358
           S+D+DD  G  +C  +   P I   K++      K E +G  E   TS Q    + +   
Sbjct: 264 SMDIDDSVGLQNCKFSSNGPKIKQAKKKQKRKSNKAETEGTNEPE-TSVQIDPLNVSMEN 322

Query: 359 CEEEDGHISYHKDQADCTMYYMCEGERKHHMPCPSNLVF 475
            E E  ++          +Y +C GE  +   CP  L F
Sbjct: 323 WENEMKNLDCETQVRQLALYLLCWGEANNIRFCPECLCF 361


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 230 KFPLITTMKQELSDYKVKLEY-DGPYETVLTS---GQYTTKDPTEVTCEEED 373
           KFPL  +  +E+ DY +   + DG  + +  S     Y  K+  +  C E D
Sbjct: 432 KFPLNRSYSREVGDYDISASFRDGLLQCIFKSLGVFNYELKEDNDDLCTEND 483


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 240 SGNLPVPQEPRKSSMSTDQTMIPPNPSSFSQAIFVLSDLSSSN 112
           +GN   P  P     ST  T  PP P+S S      S L S++
Sbjct: 294 TGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTS 336



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 240 SGNLPVPQEPRKSSMSTDQTMIPPNPSSFSQAIFVLSDLSSSN 112
           +GN   P  P     ST  T  PP P+S S      S L S++
Sbjct: 348 TGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTS 390


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 204 SSMSTDQTMIPPNP 163
           SS  TDQT+ PPNP
Sbjct: 267 SSTPTDQTLRPPNP 280


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 205 LPRLLWNWQVPAHHDHEAGTVRLQGQAGIRR 297
           LP  L  W+ P H DH     RL  +A + R
Sbjct: 444 LPSNLRKWKCPNHSDHVTPRYRLPEKAKVIR 474


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 198 MSTDQTMIPPNPSSFSQAIFVLSDLSSSN 112
           ++ D+ +I  +PS   + +F L DLS+ N
Sbjct: 268 LNEDEELISSSPSEVGKRVFRLIDLSTGN 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,012
Number of Sequences: 5004
Number of extensions: 58614
Number of successful extensions: 200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)