Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0737
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 40 0.002
04_03_0649 - 18402976-18403220,18403305-18404499 37 0.021
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873... 35 0.065
08_02_1201 - 25243516-25243681,25243784-25243892,25244046-252441... 31 0.80
02_03_0020 - 13996688-13996785,13997168-13997217,13997516-139976... 31 1.1
10_07_0101 - 12872296-12873288 30 1.8
12_02_0749 - 22758317-22760407 29 3.2
06_03_0260 - 18857970-18858737,18858909-18859145 29 3.2
03_01_0606 - 4461646-4462623 29 3.2
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 29 4.3
07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,344... 29 4.3
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 4.3
03_02_0300 - 7246312-7246662,7246757-7246831,7246920-7246993,724... 29 4.3
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 29 5.6
10_01_0273 - 2891910-2893459,2893554-2893665 28 7.4
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 28 7.4
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 17 EICEFLREDNTTLVWDNEQMVPFAYRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSVD 196
EI E+L+ + + DN+ + + Y GD WV FD ++ K+ ++ + G + ++
Sbjct: 322 EIEEYLKSQSVFVTHDNQSVADYFYSGDLWVSFDSAVVVQEKVEFVAKSQLLGYFLSTIS 381
Query: 197 MDD 205
DD
Sbjct: 382 FDD 384
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 59 WDNEQMVPFAYRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSVDMDD 205
+DN + + GD WV FD + K+A+ G G +W V+ DD
Sbjct: 342 YDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDD 390
>01_01_1102 -
8734984-8736090,8736430-8736557,8736671-8736708,
8736815-8737030,8737252-8737413,8738381-8738559,
8738693-8738799,8738918-8739082,8739201-8739284,
8739364-8739559
Length = 793
Score = 35.1 bits (77), Expect = 0.065
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 228 PVPQEPRKSSMSTDQTMIPPNPSSFSQAIFVLSDLSSSNPTHWSPR*ANGTICS 67
PVP R SS+ + M+P N + + +S ++ +W+P +GT CS
Sbjct: 537 PVPPRRRPSSVYAESVMVPVNAAPWQSECSSECSMSLTSDMNWTPSIRDGTECS 590
>08_02_1201 -
25243516-25243681,25243784-25243892,25244046-25244148,
25244273-25244304,25244405-25244625,25244948-25245063,
25245149-25245404,25245916-25246003,25246133-25246210,
25246541-25246659,25246893-25246942,25247117-25247245
Length = 488
Score = 31.5 bits (68), Expect = 0.80
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 65 NEQMVPFA--YRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSVDMDDFRGSCG-TGKF 235
N +P A + D + F + T++A + G W+ MDDF G TG+F
Sbjct: 403 NNSTIPIAEALKDDNRISFHYQHLRFTQLAIKEGVKVKGYFTWTF-MDDFEWGDGYTGRF 461
Query: 236 PLITTMKQELSDYKVKLEY 292
LI ++ L Y+ K Y
Sbjct: 462 GLIYVDRETLKRYRKKSSY 480
>02_03_0020 -
13996688-13996785,13997168-13997217,13997516-13997619,
13997664-13997764,13998436-13998505,13998604-13999422,
14000894-14001052
Length = 466
Score = 31.1 bits (67), Expect = 1.1
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 1/156 (0%)
Frame = +2
Query: 71 QMVPFAYRGDQWVGFDDE-RSLKTKMAWLKEEGFGGIMVWSVDMDDFRGSCGTGKFPLIT 247
Q +PF +RGD + + + + TK A K E + +M S F S L
Sbjct: 172 QEIPFRFRGDLYEDYGNTLNNSSTKEAHPKHEAYKEVMFVS----SFISS--EPIVHLHE 225
Query: 248 TMKQELSDYKVKLEYDGPYETVLTSGQYTTKDPTEVTCEEEDGHISYHKDQADCTMYYMC 427
T + K K GP+ VL Q TT+ + + E+E+ + D+ + +
Sbjct: 226 TERPSSPLIKPKPCLSGPHNIVLVYHQETTRFLHDASLEKENLQAT---DKLETSTL--- 279
Query: 428 EGERKHHMPCPSNLVFNPNENVCDWPENVEGCAHHT 535
E ERKH + F ++ C E+ E C+ T
Sbjct: 280 EDERKHSTYEHESFSFKIPQDSCSQKESPESCSIST 315
>10_07_0101 - 12872296-12873288
Length = 330
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 211 RLLWNWQVPAHHDHEAGTVRLQG 279
RL+W PAHHD A V +QG
Sbjct: 223 RLIWRALGPAHHDSRASVVAVQG 245
>12_02_0749 - 22758317-22760407
Length = 696
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 243 MSGNLPVPQEPRKSSMSTDQTMIPPNPSSFSQAIFVLSD 127
+SG P+ P +SS+ST PP+P+ ++A +L++
Sbjct: 20 LSGANRRPETPPRSSLSTKSAANPPDPADPARAASILAE 58
>06_03_0260 - 18857970-18858737,18858909-18859145
Length = 334
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 283 LDLVVGQFLLHGRDERELASSTGAAEV 203
LD+++G F HG DER+L + +GA V
Sbjct: 176 LDVLLGVFREHGLDERDLTALSGAHTV 202
>03_01_0606 - 4461646-4462623
Length = 325
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 561 AYRLAGGACVWCAHPSTFSGQSQTFSLGLNT 469
AY GG+C+W ST + + T+S +T
Sbjct: 209 AYTAVGGSCIWMTVQSTVAAAAGTYSFDTST 239
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 525 AHPSTFSGQSQTFSLGLNTRLEGHGMWCFRSPSHM*YMVQSAWSLW 388
A S+F G S S+ + +L+ HG WC S+ Y + +A W
Sbjct: 313 ASGSSFGGTSLLGSMHRDGQLQHHGDWCGIDASYSRYHLTNARCAW 358
>07_01_0454 +
3443871-3444024,3444268-3444356,3445482-3445557,
3445875-3445880,3445984-3446131,3446237-3446394,
3446473-3446676,3446803-3447038,3447227-3447439,
3447984-3448082,3448262-3448371,3448581-3448655,
3449407-3449485,3449563-3449709,3449785-3449865,
3449975-3450094,3450580-3450702,3451382-3451459,
3451586-3451674,3451760-3451868,3452117-3452227,
3452557-3452612,3452697-3452874,3452971-3453072,
3453160-3453231,3453350-3453415,3453502-3453567,
3453676-3453759,3454638-3454754,3455753-3455827,
3455912-3455995,3456138-3456179
Length = 1148
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 98 DQWVGFDDERSLKTKMAWLKEEGFGG 175
DQW FDDER K EE +GG
Sbjct: 521 DQWFKFDDERVTKEDAKRALEEQYGG 546
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 766 LKILLLCTKCVIQVNQLLKTHPRTHTYLHSFIYRALTGTN 647
L ++ C KC+ +++ PR YL + Y+ L+G+N
Sbjct: 1099 LTVVHACIKCLCALSKAADRGPRLLEYLVNIFYKHLSGSN 1138
>03_02_0300 -
7246312-7246662,7246757-7246831,7246920-7246993,
7247247-7247334,7247464-7247615,7247702-7247861,
7247940-7248095,7248181-7248396,7248808-7249065,
7249816-7250019,7251334-7251423
Length = 607
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 50 TLVWDNEQMVPFAYRGDQWVGFDDERSLK 136
T W++E+ VPF Y G + V +E+ L+
Sbjct: 451 TFAWEDERSVPFLYDGARLVAILEEQKLR 479
>06_03_0095 -
16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 250 GRDERELASSTGAAEVVHVDRPDHDPAEPFFLQP 149
G D +TG + VV+V+ PD E F QP
Sbjct: 31 GEDHSSRIGTTGFSRVVYVNEPDRHEEEGFRYQP 64
>10_01_0273 - 2891910-2893459,2893554-2893665
Length = 553
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +1
Query: 148 LAEGRRVR--RDHGLVCRHG-RLPRLLWNWQVPAH 243
L E RR+R RD GLV R G +P +W W VP H
Sbjct: 411 LVEARRLRVARDAGLVNRPGATVPMGVW-WLVPQH 444
>01_06_0864 -
32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 98 DQWVGFDDERSLKTKMAWLKEEGFGG 175
D W FDDER K M EE +GG
Sbjct: 410 DIWYKFDDERVTKEDMKRALEEQYGG 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,078,078
Number of Sequences: 37544
Number of extensions: 423830
Number of successful extensions: 1314
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -