Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0737
(795 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 53 3e-07
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 50 2e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 49 3e-06
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 49 4e-06
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 42 6e-04
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 41 0.001
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 39 0.003
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 31 1.2
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 30 1.5
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 30 1.5
At1g67930.1 68414.m07757 Golgi transport complex protein-related... 30 1.5
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 30 2.0
At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00... 29 2.7
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po... 28 6.2
At5g11890.1 68418.m01391 expressed protein 28 8.2
At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transfera... 28 8.2
At3g06250.1 68416.m00718 far-red impaired responsive protein, pu... 28 8.2
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/66 (31%), Positives = 38/66 (57%)
Frame = +2
Query: 17 EICEFLREDNTTLVWDNEQMVPFAYRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSVD 196
+I +F+ ++ T V+++ + + Y G W+G+DD +S+ TK+ + K+ G G W V
Sbjct: 292 QIRKFIVDNGATTVYNSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVG 351
Query: 197 MDDFRG 214
DD G
Sbjct: 352 ADDNSG 357
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +2
Query: 38 EDNTTLVWDNEQMVPFAYRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSVDMDDFRGS 217
++ T V DN + + Y G W+G+D E S+ TK+ + K++G G W V DD
Sbjct: 190 DNKATTVHDNIVIGDYCYAGTTWIGYDSEESIVTKVIYAKQKGLLGYFSWQVGGDDKSEL 249
Query: 218 CGTGKFP 238
G P
Sbjct: 250 SSAGSSP 256
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 49.2 bits (112), Expect = 3e-06
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +2
Query: 14 DEICEFLREDNTTLVWDNEQMVPFAYRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSV 193
D+I F+ ++ T+V+++ + + Y W+G+DD +S+ K+ + K+ G G W +
Sbjct: 289 DQIRRFIVDNKATMVYNSNLVQNYCYAKKTWIGYDDNQSIVMKVKYAKQRGLLGYFSWHI 348
Query: 194 DMDD 205
DD
Sbjct: 349 GADD 352
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 38 EDNTTLVWDNEQMVPFAYRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSVDMDDFRGS 217
++ T V D+ + + Y G W+G+D E+S+ TK+ + K++G G W V DD
Sbjct: 277 DNGATKVHDDMMVGDYCYAGTTWIGYDSEKSIVTKVIYAKQKGLLGYFSWHVGGDDNSEL 336
Query: 218 CGTGKFP 238
G P
Sbjct: 337 SSAGSTP 343
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 41 DNTTLVWDNEQMVPF-AYRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSVDMDDFRGS 217
DN + + ++ F Y G W+G+DD +S+ +K+ + K +G G W V D G
Sbjct: 288 DNGAATFHDPAVIGFYCYVGTTWIGYDDNQSIVSKVRYAKLKGLLGYFSWHVGADYNCGL 347
Query: 218 CGTGKFPL 241
G F L
Sbjct: 348 SRAGSFSL 355
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 14 DEICEFLREDNTTLVWDNEQMVPFAYRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSV 193
D+I + + V+D+ + + + G +G+DD +S+ K+ + K++G G W V
Sbjct: 275 DQIKRLIVDHKARPVFDSTVVGDYCFAGTSLIGYDDHQSVVAKVKYAKQKGLLGYFSWHV 334
Query: 194 DMDDFRGSCGTG 229
DD G G
Sbjct: 335 GADDNFGLSRAG 346
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 41 DNTTLVWDNEQMVPF-AYRGDQWVGFDDERSLKTKMAWLKEEGFGGIMVWSVDMDDFRGS 217
DN + + ++ F Y G+ W+G+DD +S+ K+ + K G G W V D G
Sbjct: 298 DNGAATFHDPAVIGFYCYVGNTWIGYDDNQSIVYKVKYAKFTGLLGYFSWHVGADYNCGL 357
Query: 218 CGTGKF 235
G F
Sbjct: 358 SRAGSF 363
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/43 (23%), Positives = 27/43 (62%)
Frame = +2
Query: 17 EICEFLREDNTTLVWDNEQMVPFAYRGDQWVGFDDERSLKTKM 145
+I +F+R++ V+D + + + + W+G++D +S++ K+
Sbjct: 290 QINKFIRDEEAAKVYDPKVVGHYCFAKKIWIGYEDTQSVEAKV 332
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 98 DQWVGFDDERSLKTKMAWLKEEGFGG 175
DQW FDDER K + EE +GG
Sbjct: 465 DQWYKFDDERVTKEDLKRALEEQYGG 490
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 98 DQWVGFDDERSLKTKMAWLKEEGFGG 175
DQW FDDER K + EE +GG
Sbjct: 466 DQWYKFDDERVTKEDLKRALEEQYGG 491
>At1g67930.1 68414.m07757 Golgi transport complex protein-related
similar to golgi transport complex protein (GTC90)
GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
Length = 832
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -1
Query: 243 MSGNLPVPQEPRKSSMS------TDQTMIPPNPSSFSQAIFVLSDLSSSNPTHWSPR 91
+S P PQ P SS S TD + P SSFS A F + L+S +P + R
Sbjct: 29 LSSGAPPPQTPSSSSSSPLDSFATDPILSPFLSSSFSSASFSSAALASGSPASTAER 85
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 98 DQWVGFDDERSLKTKMAWLKEEGFGG 175
DQW FDDER K + EE +GG
Sbjct: 465 DQWYKFDDERVTKEDVKRALEEQYGG 490
>At3g26000.1 68416.m03239 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 453
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 8 HEDEICEFLREDNTTLVWDNEQMVPFAYRGDQWVGFDDERSLKTKM 145
H DE+ + L DN V Q F +RG+ V DD+R+L +M
Sbjct: 338 HYDELIDLLNIDNK--VKQTIQKPRFYHRGEACVSCDDDRALDIEM 381
>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
potassium channel protein identical to SKOR [Arabidopsis
thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
6 transmembrane (1P/6TM) Shaker K+ channel family,
PMID:11500563
Length = 828
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 316 EHRLVGPVVFQLDLVVGQ--FLLHGRDERELASSTGAAEVVHVDRPDHDPAE 167
E L G V+ + VV Q F+ HG E + G+ E+V V +PDH E
Sbjct: 422 EFFLPGEVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGE 473
>At5g11890.1 68418.m01391 expressed protein
Length = 287
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 107 VGFDDERSLKTKMAW--LKEEGFGGIMVWSVDMDDFRGSCGTGKFPLITTMKQE--LSDY 274
VG++ E K KM LK EG + V + F G+ GK P++ T K+ SD
Sbjct: 223 VGYEIEMRTKVKMIMGKLKSEG----VEIKVTCEGFEGTIPKGKTPIVATSKKTKCKSDL 278
Query: 275 KVKL 286
VK+
Sbjct: 279 SVKV 282
>At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 451
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 353 VTCEEEDGHISYHKDQADCTMYYMCEGERKHHMPCPSNLVFNPNENVCDWPENVE 517
++CEE D S + + D + G H P S+ +F P+E W + E
Sbjct: 209 MSCEELDQD-SLSQSREDFKVPIFAIGPSHSHFPASSSSLFTPDETCIPWLDRQE 262
>At3g06250.1 68416.m00718 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 764
Score = 27.9 bits (59), Expect = 8.2
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Frame = +2
Query: 5 RHEDEICEFLREDNTTLVWDN--EQMV-PFAYRGDQWVGFDDERSLKTKMAWLKEEGFGG 175
++E E C L + TT+ +D +V + R + W+ E+ K A+L+ FGG
Sbjct: 482 KYEYEKC--LYQSQTTVEFDTMWSSLVNKYGLRDNMWLREIYEKREKWVPAYLRASFFGG 539
Query: 176 IMVWSVDMDDFRGSCGTGKFPLITTMKQELSDYKVKLEYDGPYETVLTSGQYT------T 337
I V D F G+ +T++++ +S Y+ LE E Y T
Sbjct: 540 IHV-DGTFDPFYGT----SLNSLTSLREFISRYEQGLEQRREEERKEDFNSYNLQPFLQT 594
Query: 338 KDPTEVTC 361
K+P E C
Sbjct: 595 KEPVEEQC 602
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,655,778
Number of Sequences: 28952
Number of extensions: 327208
Number of successful extensions: 1022
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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