Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0734
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   1.6  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   3.8  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    25   5.0  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    25   6.7  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   6.7  

>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -1

Query: 436 ILQLGFNFIVMYSLTNLNMLRCLETSNLFE*R----HATIESKAKNKLSMVPCRASSVST 269
           +L   F  +   SLTNL++  CL     F+ R    HA   +  +N    V C     ST
Sbjct: 68  LLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVNC-----ST 122

Query: 268 LNVFIL 251
           L  ++L
Sbjct: 123 LKFYVL 128


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 139 RLQL*RHYGLLLGVVEFLEITVT 71
           RLQL +H+   LG+++F+++ +T
Sbjct: 564 RLQLQKHFRFELGLLDFIDLDLT 586


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 138 RIVYFGRDRKHSVITVNIK*ELNGLDM 218
           R + F   RK  +   NI+  LNGLDM
Sbjct: 193 RHLTFSEQRKEPISEYNIEKALNGLDM 219


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 197 SFNVHGYYRVFSVTTEINYAFAIIKALR 114
           S  +HGY  V+S+T++   +F ++K +R
Sbjct: 75  SIGIHGYVLVYSITSK--SSFEMVKIVR 100


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 205 FNSHLMFTVITECFLS 158
           +N H +FT++TEC+ S
Sbjct: 365 YNPHGVFTLLTECYSS 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,946
Number of Sequences: 5004
Number of extensions: 33887
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)