Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0734
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 30 0.94
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 1.2
12_01_0010 + 74517-74529,76294-76394,76495-76526,76652-76662,804... 28 3.8
11_01_0010 + 78629-78641,80422-80522,80633-80664,80790-80800,845... 28 3.8
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 28 3.8
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 27 6.6
04_03_0271 - 13694669-13694770,13694859-13694999,13695258-136953... 27 6.6
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336... 27 8.7
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 29.9 bits (64), Expect = 0.94
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = -3
Query: 227 ICFHIQ-PIQFSFNVHGYYRVFSVTT-----EINYAFAIIKALRFVTGSRRVFRNY 78
+CFH + PI + + G R++ TT +NY + AL ++ GSRRV Y
Sbjct: 248 VCFHPELPITLTGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVIGY 303
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 293 MPCELSVNIKCIHFGKSLDLFWICFHIQPIQFSFNVHGYYR 171
+ C L N + + K L L WI FHI + + V G+YR
Sbjct: 131 LTCSLGENAQPVSSAKGLYLSWISFHIS-LMWLEGVVGWYR 170
>12_01_0010 +
74517-74529,76294-76394,76495-76526,76652-76662,
80420-80924,80999-81181,81282-81373,81491-81764,
81840-82053,82158-82228,82403-82509,82967-83016,
83125-83208,84060-84119,84196-84285,84824-84900,
85022-85106,85224-85304,85492-85595,85793-85842,
86625-86731,87603-87725,87838-87889,88090-88202,
88265-88405,88513-88602
Length = 969
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 284 ELSVNIKCIHFGKSLDLFWICFHIQPIQ 201
+ V ++ I++ KS FW FH+QP++
Sbjct: 521 QAEVTVQLINYTKSGKKFWNLFHLQPMR 548
>11_01_0010 +
78629-78641,80422-80522,80633-80664,80790-80800,
84559-85063,85136-85318,85419-85510,85628-85901,
85977-86190,86295-86365,86540-86646,87104-87153,
87262-87345,88197-88256,88333-88422,88961-89037,
89160-89244,89362-89442,89630-89733,89931-89980,
90764-90870,91743-91865,91978-92029,92230-92342,
92404-92544,92656-92745
Length = 969
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 284 ELSVNIKCIHFGKSLDLFWICFHIQPIQ 201
+ V ++ I++ KS FW FH+QP++
Sbjct: 521 QAEVTVQLINYTKSGKKFWNLFHLQPMR 548
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = -3
Query: 251 GKSLDLFWICFHIQ-PIQFSFNVHGYYRVFSVTT-----EINYAFAIIKALRFVTGSRRV 90
G + ++ +CFH + PI + + G R++ TT +NY + A+ ++ GSRR+
Sbjct: 222 GHTHNISAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRM 281
Query: 89 FRNY 78
Y
Sbjct: 282 VIGY 285
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 328 ESKAKNKLSMVPCRASSVSTLNVFILENHST-YSGYVSISNPFNS 197
+S ++ S+ P R S+S + + ++ S+ YSG+ S+++PF++
Sbjct: 198 DSPPRSFASISPPRRHSISITSRNLFDDRSSAYSGHSSVTSPFDA 242
>04_03_0271 -
13694669-13694770,13694859-13694999,13695258-13695370,
13696253-13696304,13696538-13696660,13696985-13697091,
13697280-13697329,13698284-13698387,13698610-13698690,
13698829-13698913,13699370-13699446,13700587-13700676,
13701338-13701397,13701768-13701872,13701986-13702035,
13702174-13702280,13704735-13704805,13704916-13705144,
13705228-13705704,13705807-13706405
Length = 940
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 275 VNIKCIHFGKSLDLFWICFHIQPIQ 201
+ ++ I++ KS FW FH+QP++
Sbjct: 484 ITVQLINYTKSGKKFWNLFHLQPMR 508
>01_05_0141 -
18532695-18532709,18533255-18533365,18533585-18533617,
18534011-18534140,18534219-18535660,18535990-18536358
Length = 699
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -1
Query: 253 LENHSTYSGYVSISNPFNSHLMFTVITECFLSRPK*TMRLQL*RHYGLLLGVVEFLEITV 74
+ H +SG++ +S F+ H + ITE + +L L +G+LL V+ ++
Sbjct: 224 VRKHFEHSGWIHVSPTFDVHKLTIAITESLTMKNYGFTQLSL--VHGVLLEEVQGKKLFF 281
Query: 73 TCDD 62
DD
Sbjct: 282 VLDD 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,053,890
Number of Sequences: 37544
Number of extensions: 183640
Number of successful extensions: 361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -