Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0734
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05)              30   0.95 
SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  

>SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05)
          Length = 421

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = -1

Query: 292 CRASSVSTLNVFILENHSTYSGYVS 218
           C+ + V ++NV ++E+H+ +SG++S
Sbjct: 271 CKETDVLSINVQVIEDHTCFSGWIS 295


>SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/37 (24%), Positives = 24/37 (64%)
 Frame = -3

Query: 239 DLFWICFHIQPIQFSFNVHGYYRVFSVTTEINYAFAI 129
           DL++  + I  + +++++   Y  +S+ T++ YA++I
Sbjct: 21  DLYYYAYSITDLYYAYSITNLYYAYSI-TDLYYAYSI 56



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = -3

Query: 272 NIKCIHFGKSLDLFWICFHIQPIQFSFNVHGYYRVFSVTTEINYAFAI 129
           +I  +++  S  + W  F+I  + +++++   Y   S+ T + YA++I
Sbjct: 169 SITDLYYADSKTVLWHAFNITGLYYAYSIRDLYYADSI-TNLYYAYSI 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,544,223
Number of Sequences: 59808
Number of extensions: 247741
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)