Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0734
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.28 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.28 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   2.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   4.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 301 MVPCRASSVSTLNVFILENHSTYSGYVSISNPFNSHLMFTVITE 170
           ++PC   S  T+  F L + S     +SIS   + H+ F ++ E
Sbjct: 252 IIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVE 295


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 301 MVPCRASSVSTLNVFILENHSTYSGYVSISNPFNSHLMFTVITE 170
           ++PC   S  T+  F L + S     +SIS   + H+ F ++ E
Sbjct: 252 IIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVE 295


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 301 MVPCRASSVSTLNVFILENHSTYSGYVSISNPFNSHLMFTVITE 170
           ++PC   S  T+ VF L + S     +SIS   +  + F ++ E
Sbjct: 248 IIPCMGISFLTVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAE 291


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -1

Query: 301 MVPCRASSVSTLNVFILENHSTYSGYVSISNPFNSHLMFTVITECFLSRPK*TMRLQL*R 122
           ++PC   S  ++ VF L + S     +SIS   +  + F ++ E     P  ++ + L  
Sbjct: 244 IIPCVGISFLSVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEII---PPTSLTVPLLG 300

Query: 121 HYGLLLGVVEFLEITVT 71
            Y L   V+  L + VT
Sbjct: 301 KYLLFTMVLVTLSVVVT 317


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 238 TYSGYVSISNPFNSHLM 188
           T   Y++I +PF SH M
Sbjct: 149 TVERYIAICHPFISHTM 165


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 261 YSFWKITRLILDMFPYPTHSIL 196
           Y+  +  R +LD FP P H ++
Sbjct: 264 YNVVRKFRDVLDEFPQPKHMLI 285


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 261 YSFWKITRLILDMFPYPTHSIL 196
           Y+  +  R +LD FP P H ++
Sbjct: 264 YNVVRKFRDVLDEFPQPKHMLI 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,041
Number of Sequences: 438
Number of extensions: 2223
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)