Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0731
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    26   0.27 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   5.7  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 33  ASTPRASTAWPGARTL-SASLRARSTPPSSSGALTSHPSTRSLR 161
           +++P AS A+PG RTL    LR +  P  ++    S  +  SL+
Sbjct: 8   STSPSASEAFPGGRTLVEKGLRKQGVPREATKITLSSLAKGSLK 51


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -3

Query: 154  DRVLGWL-VNAPDDDGGVE 101
            D+VL +L  NA DD+GG+E
Sbjct: 1060 DKVLTFLGANAQDDEGGLE 1078


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -3

Query: 154  DRVLGWL-VNAPDDDGGVE 101
            D+VL +L  NA DD+GG+E
Sbjct: 1060 DKVLTFLGANAQDDEGGLE 1078


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 112 GGVERA-RSDALRVRAPGHAVDARG 41
           GG E A R+ A  VRA G A  ARG
Sbjct: 268 GGEEEAERAPAPAVRAAGDAAAARG 292


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 214 GLVVDPSQTGYLTLGMGILNDRVLGWLVN 128
           GL V+ S T +  +G+G + DRVL  LVN
Sbjct: 275 GLTVNKS-TAH-AVGVGNIYDRVLSELVN 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,608
Number of Sequences: 336
Number of extensions: 3571
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)