Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0730
         (464 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   3.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   5.6  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   7.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.8  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = -2

Query: 385 TSTT*MRHTP*DIVLRSQYSHNGCPTLQTETHYCFTAEIGG 263
           TS     H   DIV   Q  HN    L  E + CF  +I G
Sbjct: 196 TSLIHSTHLNGDIVKEHQNLHNKICNLIDEFNECFGLQILG 236


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 229 PLVSPHG*VPPP 264
           P V PH  VPPP
Sbjct: 12  PTVLPHQEVPPP 23


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 218 SNYANYNFAGLIFIARCYSFTVEVNREHLLSTYFIRKIGTRLR 90
           S+Y N + A   F+AR     + +   HL     I K  ++ R
Sbjct: 413 SDYQNKSLAAFDFVARNSDTPIILWTSHLTQADVIEKYLSKAR 455


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 127 VRISLEKLVPACGIR 83
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 127 VRISLEKLVPACGIR 83
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 127 VRISLEKLVPACGIR 83
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 127 VRISLEKLVPACGIR 83
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,654
Number of Sequences: 336
Number of extensions: 2420
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10721526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)