Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0730
(464 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38640.1 68417.m05469 choline transporter-related contains we... 28 3.6
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 27 4.7
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 27 4.7
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 27 4.7
At2g37720.1 68415.m04625 expressed protein 27 4.7
At5g14570.2 68418.m01709 transporter, putative similar to trans-... 27 6.2
At5g14570.1 68418.m01708 transporter, putative similar to trans-... 27 6.2
>At4g38640.1 68417.m05469 choline transporter-related contains weak
similarity to CD92 protein [Homo sapiens]
gi|16945323|emb|CAC82175
Length = 556
Score = 27.9 bits (59), Expect = 3.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 215 NYANYNFAGLIFIARCYS--FTVEVNREHLLSTYFIRKIGTRL 93
N NFA + A C S T E+ R +LLS F+ + TR+
Sbjct: 413 NKFTINFAAITGEAYCTSAKMTYELLRRNLLSAVFVETVSTRI 455
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 274 EIGGAVVPTRADSQEVLPPVITQI 203
++ GA+V R + QE LPP++T +
Sbjct: 88 QVIGAIVDVRFEDQEGLPPIMTSL 111
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 274 EIGGAVVPTRADSQEVLPPVITQI 203
++ GA+V R + QE LPP++T +
Sbjct: 91 QVIGAIVDVRFEDQEGLPPIMTSL 114
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 274 EIGGAVVPTRADSQEVLPPVITQI 203
++ GA+V R + QE LPP++T +
Sbjct: 88 QVIGAIVDVRFEDQEGLPPIMTSL 111
>At2g37720.1 68415.m04625 expressed protein
Length = 482
Score = 27.5 bits (58), Expect = 4.7
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 78 GVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKNQTRKIIICVITGGRTSCESARVGT 257
G IP+ N N +R Q TI F G+ S + Q + ++ C+ TGG+ S E VG+
Sbjct: 193 GCNIPEF--NRVNFLRRMQNKTIAFIGD---SLGREQFQSLM-CMATGGKESPEVQNVGS 246
>At5g14570.2 68418.m01709 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 397
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -1
Query: 206 NYNFAGLIFIARCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAS 69
NY A ++ + YS+ VE+ +++++ YF + G L + T A+
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311
>At5g14570.1 68418.m01708 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 493
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -1
Query: 206 NYNFAGLIFIARCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAS 69
NY A ++ + YS+ VE+ +++++ YF + G L + T A+
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,565,693
Number of Sequences: 28952
Number of extensions: 208965
Number of successful extensions: 339
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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