Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0729
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   6.7  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   6.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   6.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.8  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 21  GAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 128
           G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 56  GEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 536 YGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 408
           YG     +T+S  SS+V  P  P    P  +    + N+S+ S
Sbjct: 321 YGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNYSVSS 363


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 561 LMILPQVPLRKPCYDFYFL*MIKFGQLP 478
           L++  ++ L K  + +YF   +KFGQLP
Sbjct: 337 LVLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -1

Query: 754 CACSTQQY*IYN----VSSQIQYRRDKRAREREKSDKR*KLRTIECMHAYIYINK 602
           C  S  Q  IYN    +    Q RRD +  +R K+D+    +++   H  + + K
Sbjct: 796 CKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLSAGHVLMQLRK 850


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +1

Query: 598 FIYLYIYTHAYIRSFLIFIVYPISHALARV 687
           F+YLY+    +I  FL+++++  + ++A +
Sbjct: 196 FLYLYVLFTYFISIFLLYVLFSSTKSIADI 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,846
Number of Sequences: 5004
Number of extensions: 58164
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)