Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0728
         (467 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   2.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   3.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   5.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   5.7  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   9.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   9.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   9.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    20   9.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    20   9.9  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 159 LKNRSARIIGRSVPVLTLSIHPLG 230
           L NR  +    +VPV  +SI PLG
Sbjct: 46  LSNRFKQDAEETVPVKKISIPPLG 69


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 111 AMLVGLLPPSSAHPARPGRDVKQWTNYTP 25
           A ++ LL P  A PAR       W  Y P
Sbjct: 8   ATIITLLQPYDATPARIVCYFSNWAIYRP 36


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 88  GEKPHQHGLAILGAKVTRSLNRPH*RI 168
           GEKP++  L +L    + +LNR H R+
Sbjct: 102 GEKPYECKLCLLRFSQSGNLNR-HMRV 127


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 88  GEKPHQHGLAILGAKVTRSLNRPH*RI 168
           GEKP++  L +L    + +LNR H R+
Sbjct: 358 GEKPYECKLCLLRFSQSGNLNR-HMRV 383


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 112 SHAGGASPPIVSTPGPS 62
           SH  GAS P V  P  S
Sbjct: 62  SHTDGASTPDVRPPSSS 78


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 112 SHAGGASPPIVSTPGP 65
           S   G  PP+  +PGP
Sbjct: 108 SSPSGNVPPLTPSPGP 123


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 112 SHAGGASPPIVSTPGPS 62
           SH  GAS P V  P  S
Sbjct: 218 SHTDGASTPDVRPPSSS 234


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +3

Query: 69  PGVLTMGGEAPPAWLGYPWSKSHAVIESP 155
           P + T     PPA   Y W K  +    P
Sbjct: 108 PQIQTQVARPPPARSPYEWIKKTSYQSQP 136


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +3

Query: 69  PGVLTMGGEAPPAWLGYPWSKSHAVIESP 155
           P + T     PPA   Y W K  +    P
Sbjct: 108 PQIQTQVARPPPARSPYEWIKKTSYQSQP 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,768
Number of Sequences: 336
Number of extensions: 2158
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)