Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0728
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 29 1.4
08_02_0406 + 16813099-16813166,16813914-16814480,16814549-168145... 29 1.9
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 2.5
08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766 28 4.3
12_02_0290 - 16934479-16934650,16935117-16935233,16935529-169356... 27 5.7
03_05_0498 - 24936084-24936295,24936413-24936629 27 5.7
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004 27 7.5
06_03_0547 + 22001831-22002304 27 7.5
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 27 7.5
06_01_0089 + 715820-716085,716178-717015 27 10.0
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 27 10.0
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 27 10.0
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 27 10.0
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207... 27 10.0
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 93 LPPSSAHPARPGRDVKQWTNYTP 25
LPPS++HP +P V T+Y P
Sbjct: 216 LPPSTSHPTQPAAYVHHQTSYIP 238
>08_02_0406 +
16813099-16813166,16813914-16814480,16814549-16814595,
16814787-16815484
Length = 459
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 93 EAPPAWLGY-PWSKSHAVIESPPLKNRSARI 182
E+PP+W+G+ W + + S P SAR+
Sbjct: 419 ESPPSWMGFVRWFRRPTALVSSPCSTSSARV 449
>02_01_0689 +
5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 180 FWHSYSLVGAIQ*PRDFCSKDSQAMLVGLLPPSSAHPARPGRDVKQWTNYTPVAQSHE 7
F ++ L + + F S D M G + S H R RD+ Q ++ A++HE
Sbjct: 87 FMPAFGLAHCLSMRQQFTSMDRDIMADGNIVQRSIHLRRKRRDLPQTSSLPKFAENHE 144
>08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766
Length = 310
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -2
Query: 160 SGGDSMTA*LLLQG*PSHAGGASPPIVSTPGPSRKGRQAMDELYARRPIP 11
S G +A +L G SH+GGA+ P TP S + DE A P P
Sbjct: 225 SSGSRSSAASVLSGEASHSGGATAP---TPDGSTVTSKTKDEETAGAPPP 271
>12_02_0290 -
16934479-16934650,16935117-16935233,16935529-16935645,
16935797-16935810
Length = 139
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 72 GVLTMGGEAPPAWLGYPWSKSHAVIE 149
GVL G PAWLG P S + +E
Sbjct: 84 GVLLHGAARQPAWLGMPLSLARHFVE 109
>03_05_0498 - 24936084-24936295,24936413-24936629
Length = 142
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +3
Query: 15 IGRRAYNSSIA*RPFRD---GPGVLTMGGEA 98
+GRR ++ A P+RD GP V+T+G A
Sbjct: 86 VGRREFDDCTADDPYRDWTDGPAVVTLGSAA 116
>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
Length = 258
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 40 PLLDVPSGTGRVC*RWGEKPH 102
P D G GR C RWG++PH
Sbjct: 236 PSPDTGLGLGRQC-RWGQRPH 255
>06_03_0547 + 22001831-22002304
Length = 157
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 106 AGGASPPI---VSTPGPSRKGRQAMDELYARRPIPRT 5
A G PP+ S P R+GR + + AR IPRT
Sbjct: 110 AAGDDPPVGRWKSRRSPRRRGRTSASAVTARLSIPRT 146
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 101 WGFSPHRQHTRPVPEGTSSN 42
WGF RQH P P G N
Sbjct: 52 WGFGRSRQHAEPSPAGALIN 71
>06_01_0089 + 715820-716085,716178-717015
Length = 367
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 229 PSGWIDRVSTGTDRPIILALLFFSGGDSMTA*LLLQG*PSHAGGASPPIVSTP 71
P ++R+S+G ++ + GGD +++ L QG PS + + P+ P
Sbjct: 259 PDSLLNRISSGISGDMLGSPELCHGGDGLSSPELGQGGPSASNMTTSPMAPPP 311
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 160 SGGDSMTA*LLLQG*PSHAGGASPPIVSTPGPSRKGRQA 44
SGG S+ +L G P+ A A+ PG RKGR A
Sbjct: 696 SGGGSVGVGILTSGKPTAAAVAAFSSAVVPGRWRKGRPA 734
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 115 PSHAGGASPPIVSTPGPSRKGRQAMDELYARRPIP 11
P++ PP STP P + +Q E AR P P
Sbjct: 355 PNNDAPPRPPAQSTPPPPPQQQQHQPETKAREPEP 389
>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
Length = 301
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Frame = -2
Query: 115 PSHAGG--ASPPIVSTPG 68
PSH GG ASPP+ +PG
Sbjct: 110 PSHGGGYGASPPVTPSPG 127
>01_01_0254 -
2074095-2074100,2074389-2074462,2074572-2074633,
2074790-2075123,2075271-2075487,2075575-2075685,
2076304-2076840
Length = 446
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 83 RQHTRPVPEGTSSNGRIIRPSPNPTNP 3
RQ +P P G ++ R + PSP+PT P
Sbjct: 37 RQQQQP-PAGGATRLRAVSPSPSPTPP 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,709
Number of Sequences: 37544
Number of extensions: 277706
Number of successful extensions: 802
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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