Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0728
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical p...    28   2.9  
AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 160 SGGDSMTA*LLLQG*PSHAGGASPPIVSTPGPSRKGRQAMDELYARRPI 14
           SGGD  T   L  G  + +   SP   S P PS    ++M  L A  PI
Sbjct: 32  SGGDMKTLETLDDGGSTSSHQTSPEYPSPPPPSNSPPESMASLQAESPI 80


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 160 SGGDSMTA*LLLQG*PSHAGGASPPIVSTPGPSRKGRQAMDELYARRPI 14
           SGGD  T   L  G  + +   SP   S P PS    ++M  L A  PI
Sbjct: 32  SGGDMKTLETLDDGGSTSSHQTSPEYPSPPPPSNSPPESMASLQAESPI 80


>U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical
           protein B0207.11 protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +2

Query: 152 APTKE*ECQNYWSIGPGTDPIDPSTWLN*IKLNQT*KQLKSESKRTNRLIITIKVVSIN 328
           AP    + Q+Y  IGP ++P++P   L+  + ++T    +S  KR+  L   I V ++N
Sbjct: 89  APVLVDDNQSYVMIGPPSEPVEPPATLS-TETSKTNAIEESTVKRSEALSAYIGVATLN 146


>AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical
           protein Y56A3A.5 protein.
          Length = 762

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 162 LVGAIQ*PRDFCSKDSQAMLVGLLPPSSAHPARPGR 55
           LVG+++ P  FC   S       L  S  HP  PGR
Sbjct: 381 LVGSLRIPAAFCGLVSLKPTQDRLHESEMHPGLPGR 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,869
Number of Sequences: 27780
Number of extensions: 202637
Number of successful extensions: 447
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)