Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0728
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   2.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 117  SQAMLVGLLPPSSAHPARPGRDVKQWTNYTPVAQSHEP 4
            S+++LV   PPS     +P   + Q+T YT    + EP
Sbjct: 1193 SESILVSWRPPS-----QPNGVITQYTVYTKADNAEEP 1225


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 247 KSNLEAIKKRKQ-EN*SINYNYKSGEY*YN 333
           ++  E  K+RK   + S NYNY +  Y YN
Sbjct: 303 RTERERSKERKIISSLSNNYNYNNNNYKYN 332


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 367 LVF*LFVIIIVNCINTHHFYSY 302
           L F L   + + C N+ HF+ Y
Sbjct: 320 LFFGLLSDLAIGCWNSEHFFEY 341


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  PGRAGCADDGGRSPTSMAWLSLEQK 133
           PGR     +G   PT +  L++E+K
Sbjct: 398 PGRLQTKPEGFMIPTHLKVLTIEEK 422


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = -2

Query: 154 GDSMTA*LLLQG*PSHAGGASPPIVSTPGPSRKGRQAMD 38
           GD     LL QG P H  GA+      P P       MD
Sbjct: 49  GDPCDPSLLRQGVPGHHYGAAGSQQDMPYPRFPPYNRMD 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,190
Number of Sequences: 438
Number of extensions: 2921
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)