Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0728
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42320.1 68415.m05238 nucleolar protein gar2-related contains...    31   0.29 
At3g51650.1 68416.m05664 expressed protein                             29   2.1  
At3g51640.1 68416.m05663 expressed protein                             27   4.8  
At1g34310.1 68414.m04257 transcriptional factor B3 family protei...    27   8.4  

>At2g42320.1 68415.m05238 nucleolar protein gar2-related contains
           weak similarity to Swiss-Prot:P41891 protein gar2
           [Schizosaccharomyces pombe]
          Length = 669

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 122 RIAKPCWWG-FSPHRQHTRPVPEGTSSNGRIIRPSPNPTN 6
           RI +  WW  F+PH Q        + SNG+++ PS    N
Sbjct: 339 RIVESVWWQVFTPHMQSPEDDSSASKSNGKLMGPSLGDQN 378


>At3g51650.1 68416.m05664 expressed protein
          Length = 826

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 88  PIVSTPGPSRKGRQAMDELYAR-RPIP 11
           P+VS P PSR+ R++  +L+AR  P P
Sbjct: 476 PVVSEPKPSREPRKSWHQLFARSTPAP 502


>At3g51640.1 68416.m05663 expressed protein
          Length = 826

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 88  PIVSTPGPSRKGRQAMDELYAR-RPIP 11
           P+VS P PSR+ +++  +L+AR  P P
Sbjct: 476 PVVSEPKPSREPKKSWHQLFARSTPAP 502


>At1g34310.1 68414.m04257 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 593

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 207 SVPGPIDQ*FWHSYSLVGAIQ*PRDFCSKDSQAMLVGLLPPSSAHPARP 61
           S PGP     W    L+ AI  PR F  K+ +   V  +  SS+H   P
Sbjct: 339 SFPGPKKVSPWDIEHLMPAINVPRSFLLKNKRLREVNEIGSSSSHLLPP 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,927,597
Number of Sequences: 28952
Number of extensions: 198515
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)