Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0727
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   1.2  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    28   1.6  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   3.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.5  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   8.5  

>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +2

Query: 440 HDEKWLYMCRYYDLVISRVLQLCTMPWSVWNKVAY*RAYMEIYSKKFYCCIQWHYITQPS 619
           H  KW    + +   +   L++    + +W+  A    + +IY   ++C IQ  Y+ Q  
Sbjct: 79  HPHKWPLWKKLFVATVYTFLEV----YVIWSSTACIN-FFDIYQTNWHCSIQVSYLVQSL 133

Query: 620 HLIRNHIFGDIL 655
            ++ N  FG +L
Sbjct: 134 FIVGN-AFGPML 144


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 307 IRMVNTYLTVYTLHLCVYSFPIL*TMIPRPLCKPF--PEHIEIL 182
           IR++NT +  +   LC+Y   +    IP  LC+ F  PE + +L
Sbjct: 37  IRIINTIIISFMTMLCMYGSSVFMPSIPE-LCEKFGEPETLVVL 79


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 638 CDF*SNVKAG*CSAIVYNNKISSSKSPYKPFNRPLCSK 525
           CD  SNV    CS +   NK + + S    F  PLCSK
Sbjct: 233 CDHCSNVYHYDCSPLPSLNKETRNYSQQNGFICPLCSK 270


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 169  LILHIKFQCVLEMVCKEDVVSWFKELESYKRIDAMCTLLNMCLPFELR 312
            +I  +   C  + V K    + FK+++  + I+++  LL M LP ELR
Sbjct: 1524 MISKVGLSCFSQFVLKNK--NQFKDVDWDEIINSINQLLQMTLPIELR 1569


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 518 WSVWNKVAY*RAYMEIYSKKF 580
           WSVWN  +Y   Y++++ ++F
Sbjct: 361 WSVWNGASY---YIDVFGRRF 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,462
Number of Sequences: 5004
Number of extensions: 71751
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)