Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0727
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    29   2.9  
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062...    28   6.7  
10_08_0125 - 15000650-15001717                                         28   8.8  
07_03_0101 + 13415874-13415922,13416884-13417629                       28   8.8  
05_04_0311 - 20120172-20122115                                         28   8.8  

>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
            15222420-15226194
          Length = 2502

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +1

Query: 289  MCLPFELRFIGTYLEELGKRDFQELRGAELRANNPTDLAADIGGANADPRTRRKMALYVS 468
            + L  +L  +GTYLE+L K D   L  A+       +L+ DI     +   + K+A +V 
Sbjct: 1009 LLLKGDLEEVGTYLEDLSKVDDPHLM-AKCWMKEVRELSYDIEDYTYNIEDKIKLAGHVH 1067

Query: 469  LLRSCNFAC 495
            L     F C
Sbjct: 1068 LNTKTRFVC 1076


>04_04_0294 +
           24204563-24204748,24205531-24205620,24205980-24206211,
           24207180-24207457,24207576-24207647,24208054-24208295,
           24208781-24209197,24209296-24209497,24209624-24209738,
           24209821-24209906,24210235-24210354,24210431-24210519,
           24210588-24210669,24211072-24211263,24211546-24211668
          Length = 841

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 593 QWHYITQPSHLIRNHIFGDILEKLKLEDQRMQYPEQPEHINVV 721
           ++H I  P  L+     G +  +L+ ED+ MQ+   P H  ++
Sbjct: 660 RFHQIKTPRKLLWKKNLGTVKLELQFEDRSMQFTVAPVHAAII 702


>10_08_0125 - 15000650-15001717
          Length = 355

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -1

Query: 228 YHVLFANHFQNTLKFYVKNQPVSCSRSASFFYNFWHTQSPQYCDGCNPNIFNC 70
           YHVL  N + NTLK    +   SC  SA    + WH     Y  GC  +  +C
Sbjct: 17  YHVLKINGYSNTLKAGRHHPLSSCPFSAG--GHTWHVS--YYPHGCRDSNKDC 65


>07_03_0101 + 13415874-13415922,13416884-13417629
          Length = 264

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = -2

Query: 527 KLTMALYRVVAHAKLQDRNNDTYKAIFRRVLGSAFAPPMSAARSVGLLALSS 372
           KLT  LY  V  + L D     YK        SA  P +   RS G+L L S
Sbjct: 13  KLTDGLYSTVIISFLTDFGGGNYKLNLAGHAWSAVGPDVKYCRSKGVLVLLS 64


>05_04_0311 - 20120172-20122115
          Length = 647

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 734 HHSLALHLCVLAVLDIAFVDLPILIFPKCHQK 639
           H +  L  C+  ++    +D+PIL+FP  H +
Sbjct: 605 HMTSKLPKCIYKLVQSGVLDMPILLFPDSHPR 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,588,551
Number of Sequences: 37544
Number of extensions: 444533
Number of successful extensions: 1115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)