Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0727
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45508| Best HMM Match : PT (HMM E-Value=7) 62 6e-10
SB_423| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 29 5.2
SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_12257| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_46689| Best HMM Match : HGD-D (HMM E-Value=3.9) 28 6.8
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 28 6.8
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_35443| Best HMM Match : Condensation (HMM E-Value=0.006) 28 9.0
>SB_45508| Best HMM Match : PT (HMM E-Value=7)
Length = 261
Score = 61.7 bits (143), Expect = 6e-10
Identities = 46/135 (34%), Positives = 63/135 (46%)
Frame = +1
Query: 304 ELRFIGTYLEELGKRDFQELRGAELRANNPTDLAADIGGANADPRTRRKMALYVSLLRSC 483
++RFIGTYLE + D+ + E ANNPTDL+ D + RR + L ++LL S
Sbjct: 18 QIRFIGTYLESAAQIDYFAFKTYESTANNPTDLSYLY--LLDDAQVRRNLCLCLALLHSN 75
Query: 484 NFACATTLYNAMVSLEQSGLLKXXXXXXXXXXXXXXTMALHHPAFTFDQKSHFW*HFGKI 663
N A LY + + S L TMA +HPAF+F QK K+
Sbjct: 76 NRQAAAVLYGNLNDFQPSSSL---DPDVQAELALLFTMAANHPAFSFHQKHVL---RSKL 129
Query: 664 KIGRSTNAISRTART 708
K+ R T S + T
Sbjct: 130 KVLRQTVTTSDLSET 144
>SB_423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/87 (35%), Positives = 40/87 (45%)
Frame = +1
Query: 373 ELRANNPTDLAADIGGANADPRTRRKMALYVSLLRSCNFACATTLYNAMVSLEQSGLLKX 552
E ANNPTDL+ D + RR + L ++LL S N A LY + + S L
Sbjct: 9 ESTANNPTDLSYLY--LLDDAQVRRNLCLCLALLHSNNRQAAAVLYGNLNDFQPSSSLDP 66
Query: 553 XXXXXXXXXXXXXTMALHHPAFTFDQK 633
TMA +HPAF+F QK
Sbjct: 67 DVQAELALLF---TMAANHPAFSFHQK 90
>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 223 VVSWFKELESYKRIDAMCTLLNMCLPFELRFIGTYLEELGKRDFQELRGAELRANNPTDL 402
V WF +++ +C+L C +L+ + T L+ + RDF A+LR + PT L
Sbjct: 68 VCEWFSSWRPWQKRILLCSLTEKCTKPQLQALFTTLQPVFHRDFI----AKLRGSYPTAL 123
>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 413
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 150 SASFFYNFWHTQSPQYCDGCNPN 82
+A +F+N+W + SPQY D N
Sbjct: 63 AAEWFWNYWKSGSPQYVDFMKQN 85
>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 199 LEMVCKEDVVSWFKELESYKRIDAMCTLLNMCLPFEL 309
L M+ E++ SW +++E +KR +C + P +L
Sbjct: 808 LTMITSEEIASWERKVEVFKRPRKICLVYRGSRPLKL 844
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 304 ELRFIGTYLEELGKRDFQELRGAELRANNPTDLA 405
+LRF G YL+ LGK F+ L EL A+ DLA
Sbjct: 557 KLRFNGMYLQ-LGKCAFKGLLKGELSADTAEDLA 589
>SB_12257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 201 QNTLKFYVKNQ--PVSCSRSASFFYNFWHTQSP 109
QNTLK Y+ Q VSC R +F + F+H P
Sbjct: 62 QNTLKKYLSFQLNRVSCHRFTNFTHTFFHYLPP 94
>SB_46689| Best HMM Match : HGD-D (HMM E-Value=3.9)
Length = 420
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 548 FNRPLCSKLTMALYRVVAHAKLQDRNNDTYK 456
FNR +C+K + RV HAK D D K
Sbjct: 376 FNRSICTKYDHIVVRVTTHAKTTDELVDLEK 406
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 346 RDFQELRGAELRANNPTDLAADIGGANADPRTRRK 450
R+ +E++ ++ PT+ AD G NADP +K
Sbjct: 512 RENEEIKRRKMHPKIPTETPADEPGTNADPTRAQK 546
>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.3 bits (60), Expect = 6.8
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Frame = -2
Query: 557 YKPFNRPLCSKL--TMALYRVVAHAKLQDRNNDTYKAIFRRVLG----SAFAP----PMS 408
Y+ R L S+ T A+ R++ K R + +A FR V G S+++P P S
Sbjct: 154 YRSGERVLLSRRRPTSAMGRIITKKKTPPRRTNLLEA-FRAVAGTPDGSSYSPSSPRPRS 212
Query: 407 AARSVGLLALSSAPRNS*KSRLPSSSRYVPMKRNSNG 297
A S+G +S PR+ SR+ + V + S G
Sbjct: 213 TAGSIGPPPRTSTPRSRTGSRVRTPPTPVSSRAPSRG 249
>SB_35443| Best HMM Match : Condensation (HMM E-Value=0.006)
Length = 558
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 485 LQDRNNDTYKAIFRRVLGSAFAPPMSAARS 396
L+ ++N Y + R G AFAPP + RS
Sbjct: 524 LETKSNGDYVRVRRGFAGGAFAPPPNGGRS 553
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,419,838
Number of Sequences: 59808
Number of extensions: 531896
Number of successful extensions: 1253
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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