Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0727
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    30   2.0  
AL021472-1|CAA16299.2|  397|Caenorhabditis elegans Hypothetical ...    29   2.6  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    29   3.4  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    29   3.4  
Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
           protein C36B1.8b protein.
          Length = 1052

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 220 DVVSWFKELESYKRIDAMCTLLNMCLPFELRFIGTYLEELGKRDFQELRGAELRAN 387
           D V  FKE + + +++ MC L++   P +LR +G  +E   +    ++R  E  +N
Sbjct: 322 DSVMAFKEHDEWDKVEFMCELVSFLSPTDLRLLGNCIEGSVRCYNNQMRPVEKTSN 377


>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
           protein C36B1.8a protein.
          Length = 1049

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 220 DVVSWFKELESYKRIDAMCTLLNMCLPFELRFIGTYLEELGKRDFQELRGAELRAN 387
           D V  FKE + + +++ MC L++   P +LR +G  +E   +    ++R  E  +N
Sbjct: 322 DSVMAFKEHDEWDKVEFMCELVSFLSPTDLRLLGNCIEGSVRCYNNQMRPVEKTSN 377


>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 211 CKEDVVSWFKELESYKRIDAMCTLLNMCLPFELRFIGTYLEELGKRD 351
           C  D  +W K LE +  +   C  LN C   E + +   L  + + D
Sbjct: 21  CLNDTDTWLKSLEIFSTVSVECLTLNNCTTQESKILDENLYAVKQLD 67


>AL021472-1|CAA16299.2|  397|Caenorhabditis elegans Hypothetical
           protein Y17D7B.1 protein.
          Length = 397

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 428 QTLEHDEKWLYMCRYY-DLVISRVLQLCTMPWSVWNKVAY*RAYMEIYSKKFY 583
           + LE    WL  CR +  L I   L +  + W+VW +        E++ +K Y
Sbjct: 185 EQLEDTATWLMNCREFRGLPIHEKLAIFKIVWAVWRRFERYTMSAEVFGQKCY 237


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 199 LEMVCKEDVVSWFKELESYKRIDAMCTLLNMCLPFELRFIGTYLEELGKRDFQ 357
           +E      +     ELE+ ++ + M T    C+  EL  IGT +EE  +R+ Q
Sbjct: 554 VEKEVNRQIADKLSELETLRKTNEMLTNDEECISDELEAIGTAVEEEQERNAQ 606


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 199 LEMVCKEDVVSWFKELESYKRIDAMCTLLNMCLPFELRFIGTYLEELGKRDFQ 357
           L+      +     ELE+ ++ + M T    C+  EL  IGT +EE  +R+ Q
Sbjct: 557 LQKEVNRQIADKLSELETLRKTNEMLTNDEECISDELEAIGTAVEEEQERNAQ 609


>Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical
           protein T26H2.3 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 146 RPFSIIFGTRNLHNIVMVVIQIYSTVTLVKYNFISIFQVEYWLSL 12
           R  SI+   + LH I  ++I   ST   +  NFI+ FQV ++L++
Sbjct: 37  RSKSIVESAKLLHAIEFIII--LSTHIRISMNFINSFQVYFYLNI 79


>U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical
           protein R08C7.4 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 516 HGQFGTKWPIEGLIWRFTRRN 578
           HGQ G++W ++G + R T RN
Sbjct: 230 HGQKGSEWELDGKLQRDTSRN 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,276,022
Number of Sequences: 27780
Number of extensions: 416264
Number of successful extensions: 1119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)