Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0727
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 210 NHFQNTLKFYVKNQPVSCSRSASFFYNFWHTQSPQYCDGCNPN 82
           +H   +L+     QP + S S S + N  +    Q+   C P+
Sbjct: 355 HHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTPS 397


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 593 QWHYITQPSHLIRNHIFGDILEK 661
           QW+++ +   LI +HI   +L+K
Sbjct: 626 QWNWVYEWKELIPSHIMAGLLDK 648


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 270 NVYTVKYVFTIR 305
           NVYT  Y++TI+
Sbjct: 40  NVYTKAYIYTIK 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,804
Number of Sequences: 438
Number of extensions: 5106
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)