Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0727
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08070.1 68418.m00941 TCP family transcription factor, putati...    29   3.2  
At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiqu...    29   3.2  
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi...    28   5.6  
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ...    28   7.4  
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    27   9.8  
At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-proly...    27   9.8  

>At5g08070.1 68418.m00941 TCP family transcription factor, putative
           similar to TFPD (GI:6681577) [Arabidopsis thaliana] ;
           putative basic helix-loop-helix DNA binding protein TCP2
           - Arabidopsis thaliana, EMBL:AF072691
          Length = 242

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 225 HVLFANHFQNTLKFYVKNQPVSCSRSASFFYNFWHTQ 115
           H+   NHF N+++      P   S S+S+ YN  H Q
Sbjct: 144 HIDHHNHFSNSIQSNKLYFPTITSSSSSYHYNLGHLQ 180


>At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3,
           ubiquitin ligase; contains similarity to
           anaphase-promoting complex subunit 2 GI:6180009 from
           [Homo sapiens]
          Length = 865

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 593 QWHYITQPSHLIRNHIFGDILEKLKLEDQRMQYPEQPEHINVV 721
           ++H I  P  L+     G +  +L+ ED+ MQ+   P H  ++
Sbjct: 666 RYHEIKTPRKLLWKKNLGTVKLELQFEDRAMQFTVSPTHAAII 708


>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 706

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 193 CVLEMVCKEDVVSWFKELESYKRI 264
           C+ E + + DVVSW   + +YKRI
Sbjct: 265 CLFENMSERDVVSWTSLIVAYKRI 288


>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 259

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 210 NHFQNTLKFYVKNQPVSCSRSASFFYNF 127
           NHF +  K Y+   P++CS  AS  Y F
Sbjct: 139 NHFSSCGKVYLIYVPIACSTGASVGYAF 166


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 93  NHHNIVEIACAKNYRKRTRYGCRRPVDSSHKISMC 197
           N H+  E  C  +++K+ +   +   D SHK+  C
Sbjct: 780 NFHSAEEAFCESSHQKKKKSKDKERCDESHKLERC 814


>At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein identical to Probable
           FKBP-type peptidyl-prolyl cis-trans isomerase 2,
           chloroplast precursor (Ppiase) (Rotamase)
           (SP:O22870)[Arabidopsis thaliana]; contains Pfam
           PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 223

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 413 MSAARSVGLLALSSAPRNS*KSRLPSSSRYV 321
           M+A+    LL L SA RN   ++ P+SSRY+
Sbjct: 1   MAASSPSLLLPLGSASRNGLTTKNPNSSRYI 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,430
Number of Sequences: 28952
Number of extensions: 372868
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)