Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0725
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    29   0.31 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.2  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   6.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.6  
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    25   8.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    25   8.7  

>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 313 QEQLLRE*DLLGSIRDVSIGNYMTDVPKTQATLEREKRSSRFQCK 179
           +   +R+   LG+IR+V +G   TDV   +   +R+K+ +R + K
Sbjct: 194 EHSFIRDAAALGAIREVDLGIISTDVDNLKNGRKRQKKRARMKEK 238


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 157 YILYDMKICIGNANFFSLFLTWL 225
           YIL +  + +G ++F S+FL WL
Sbjct: 567 YILLNENLFVGQSSFKSVFLKWL 589


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 271 GLSPTNLIREATALELLGL-LW 333
           G SPTNLI +A    +LGL +W
Sbjct: 142 GCSPTNLICKAVVHSILGLGIW 163


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 85   PIDIYEINAPPTLRYKFGNSRYGSE 11
            P+DI  +++ P  R  +GNS +  E
Sbjct: 1061 PLDIKTVDSSPNKRLDYGNSGFAHE 1085


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 419 RPFQFHQDRWASKGSARRGGIC*QLLERFQRRPNNSRAVASRMR 288
           RP + ++   A +GS  R G+C ++     ++PN++    +R+R
Sbjct: 34  RPEKTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVR 77


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 278  LNPRCQYWKLHDGRSKNTSHVRKR 207
            LN   Q+W  H  RSK  + + KR
Sbjct: 2615 LNSPRQFWAYHGSRSKKIADIVKR 2638


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 289 DLLGSIRDVSIGNYMTDVPKTQATLE 212
           D+  ++R VS GN++  VP    TLE
Sbjct: 363 DIYEAVRAVSPGNFILSVPFPAKTLE 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,918
Number of Sequences: 5004
Number of extensions: 43707
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)