Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0725
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1937| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   27   6.8  
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             27   9.0  
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   27   9.0  

>SB_1937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +2

Query: 245 HVISNTDIAD*AQQISFAKQLLLSC*VSFGSARAAVSKSHPFWLSLCSPTCPGETGKASG 424
           HV++ +D+ D   +++  KQ+L +    +GS  A +S S  F  S   P  PG+      
Sbjct: 3   HVVAPSDMMD--NRVAAIKQILAAN--GYGSKVAVLSYSAKFASSFYGPFSPGDPLVLER 58

Query: 425 PP 430
           PP
Sbjct: 59  PP 60


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 486 GTGPPLEXXXXXFSY*RITGGPEAFPVSPGQV 391
           GT  P        SY   T  P A+P SP QV
Sbjct: 134 GTSAPASTAAPPLSYPAPTSSPHAYPYSPAQV 165


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 210  LSNVACVFGTSVM*FPILTSRIEPNKSHSR 299
            L N AC F TS   FP+L SR+ P    S+
Sbjct: 1263 LKNTACHFFTSG--FPVLLSRVSPYSDKSK 1290


>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 419 RPFQFHQDRWASKGSARRGGIC*QLLERFQRRPNNSR 309
           RPF +  DRWA  G A  GG+      R  R+ + S+
Sbjct: 156 RPFLYRGDRWAGHGGA--GGVHEAARRRDHRKRHRSK 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,502,562
Number of Sequences: 59808
Number of extensions: 327344
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)