Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0725
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75380.3 68414.m08757 wound-responsive protein-related simila...    29   2.4  
At1g75380.2 68414.m08756 wound-responsive protein-related simila...    29   2.4  
At1g75380.1 68414.m08755 wound-responsive protein-related simila...    29   2.4  
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    27   5.5  
At1g03120.1 68414.m00289 seed maturation family protein similar ...    27   7.3  

>At1g75380.3 68414.m08757 wound-responsive protein-related similar
           to wound inducive gene GI:8096273 from [Nicotiana
           tabacum]
          Length = 325

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 326 RPNNSRAVASRMRFVGLNPRCQYW 255
           RP    A AS + + GL PR Q+W
Sbjct: 14  RPRQVGACASLVNYTGLKPRSQFW 37


>At1g75380.2 68414.m08756 wound-responsive protein-related similar
           to wound inducive gene GI:8096273 from [Nicotiana
           tabacum]
          Length = 325

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 326 RPNNSRAVASRMRFVGLNPRCQYW 255
           RP    A AS + + GL PR Q+W
Sbjct: 14  RPRQVGACASLVNYTGLKPRSQFW 37


>At1g75380.1 68414.m08755 wound-responsive protein-related similar
           to wound inducive gene GI:8096273 from [Nicotiana
           tabacum]
          Length = 325

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 326 RPNNSRAVASRMRFVGLNPRCQYW 255
           RP    A AS + + GL PR Q+W
Sbjct: 14  RPRQVGACASLVNYTGLKPRSQFW 37


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 352 NSCSSASKGDLTTQEQLLRE*DLLGSIRDVSIGNY--MTDVPKTQATLER-EKRSSRFQC 182
           NSC ++ KG    ++   ++ DL+GS    + G +   +   KTQ    R +KR++R  C
Sbjct: 535 NSCCNSKKGRKKARKHYTQDDDLMGSTITRNKGKFSRSSQKKKTQKPKARTKKRNNRGGC 594

Query: 181 K 179
           +
Sbjct: 595 R 595


>At1g03120.1 68414.m00289 seed maturation family protein similar to
           embryonic cell protein [Daucus carota] GI:18337;
           contains Pfam profile PF04927: Seed maturation protein
          Length = 182

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = -2

Query: 403 TRTGGRAKAQPEGVGFANSCSSASKGDLTTQEQLLRE*DLLGSIRDVSIGNYMTDVPKTQ 224
           TR  G +K +P G+  A   ++ +     ++E  +   D+L    +   G+ +      +
Sbjct: 89  TRATGESKGRPGGLAVAAQAAATTNEQTVSEEDKVNIADILTDAAERLPGDKVVTSEDAE 148

Query: 223 ATLEREKRSS 194
           A +  E RSS
Sbjct: 149 AVVGAELRSS 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,205
Number of Sequences: 28952
Number of extensions: 238734
Number of successful extensions: 464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)