Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0723
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    29   0.41 
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    29   0.72 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.7  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   6.7  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   8.9  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 129 VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGAISEGKLHTDFLPD 269
           +P REE S + P  +  V      + PS+K  G IS  K++  F  D
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFFFDD 151



 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 34  LAYSSTIFPRSPPTHLALFADDTTVYYSS 120
           L+Y   +FP S P    L AD   +YY S
Sbjct: 176 LSYGLILFPISDPLFKNLGADGLAIYYVS 204


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +1

Query: 22  HPSYLAYSST-IFPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRI 198
           HPS  A   T I P S      LF D   +   + NKS +  +L      LG      RI
Sbjct: 261 HPSINALLLTPICPNSLSFRPVLFPDTFKISIETSNKSRVRPQLSIDGRPLGLTDIGQRI 320

Query: 199 DINPAKSTAV 228
           DI   K  A+
Sbjct: 321 DITSVKDNAI 330


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +1

Query: 16  SSHPSYLAYSSTIFPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWR 195
           SSHP Y AY   + P    +    F    +  Y S    L A   ++    LG W +K +
Sbjct: 118 SSHPDYQAYEKAL-PEYKKSIEEKFPIVCSECYDSVQDQLDANDYEAKNQVLGYWLQKSK 176

Query: 196 IDIN 207
             +N
Sbjct: 177 EQLN 180


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 433 PMICKRSKMSLRNKVTLYK 489
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 13   LSSHPSYLAYS-STIFPRSPPTHLALFADDTTVYYSSR 123
            + +HP + + +  TI    PP     F+ + TVY+ SR
Sbjct: 952  IKAHPFFKSVNWDTILEEDPPFVPKPFSPEDTVYFDSR 989


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 343 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKR 450
           LG++   +M +  H  ++ D+   +LGR+ P++C R
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSR 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,975
Number of Sequences: 5004
Number of extensions: 50468
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)