Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0723
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107...    30   1.3  
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18...    30   1.3  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   5.2  
01_06_1724 - 39452858-39454309                                         28   5.2  
05_05_0018 - 21547649-21547875,21547973-21548187,21548831-215490...    27   9.2  

>11_01_0129 -
           1073002-1073073,1073463-1073585,1073667-1073732,
           1074227-1074347,1074536-1074603,1074792-1074863,
           1076045-1076222,1077554-1077888
          Length = 344

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 17  PLTPPI*LIRQRYSPGRRRPI*LY 88
           P  PP+  +R+R+  GRRRP+ +Y
Sbjct: 39  PALPPVDALRRRFRRGRRRPVRVY 62


>04_01_0009 -
           178579-178638,179151-179246,179504-179565,180181-180245,
           181271-181363,181489-181592,182070-182153,182223-182303,
           182829-182880,183048-183119,183411-183486,183568-183680,
           184056-184203,184295-184372,184511-184640,184733-184923,
           187039-187099,187201-187371
          Length = 578

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 22  HPSYLAYSSTIFPRSPPTHLALFADDT-TVYYSSRNKSLIAKKLQSAALALGQ 177
           +P Y A   T F     T LALF   T T Y +S+  S+ A ++  ++L LG+
Sbjct: 448 NPHYRAGKRTEFTLDTRTSLALFGSFTSTDYVASQRISITAPEIPQSSLKLGE 500


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 112 YSSRNKSLIAKKLQSAALALGQWFRKWR 195
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 336 QVPGRYPGCINDIPPAYKISP*PCRVY 416
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


>05_05_0018 -
           21547649-21547875,21547973-21548187,21548831-21549096,
           21549534-21549657,21549946-21550041,21550179-21550294,
           21550374-21550455,21550574-21550728,21550819-21551001,
           21551114-21551305,21551389-21551564,21551676-21551729,
           21552076-21552147,21552255-21552582
          Length = 761

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 22  HPSYLAYSSTIFPRSPPTHLALFADDTTVYYSSRNKSLIAK-KLQSAALALGQ 177
           HP Y  Y   +F    P+ LA       V YSS +K    +  L  AAL + +
Sbjct: 603 HPDYRIYLQCLFSALEPSSLAKAIYPVLVSYSSPDKQAFPRHTLSRAALIMSE 655


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,674,261
Number of Sequences: 37544
Number of extensions: 390867
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)