Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0723
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 165  SPRTVVPKMAHRHQPSEKYCGAISEG 242
            S RT VP++A      E Y G  + G
Sbjct: 1336 SRRTPVPRLAQDSSEDESYRGPSASG 1361


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 617 QLTCKSAANLQKRDCRD 567
           Q+T K  AN  KRD  D
Sbjct: 61  QMTVKELANSAKRDIND 77


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 342 PGRYPGCINDIPPAY 386
           PG YP     +PP+Y
Sbjct: 302 PGVYPSTAGFLPPSY 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,415
Number of Sequences: 438
Number of extensions: 3627
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)