Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0721
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            29   2.5  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)                 28   4.3  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73)                      28   5.7  
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   5.7  
SB_53710| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)            27   7.5  
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)                    27   9.9  

>SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRPQYLP 351
           P L L   R  P  P+PS  P L+P RP  +P
Sbjct: 254 PDLSLTRKRMAPPPPTPSSGPMLKPERPTPVP 285


>SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRP 339
           P LRL  TR TP  PSP Q P   P  P
Sbjct: 128 PRLRLRLTRLTPPQPSPPQPPQPPPQPP 155


>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 247 LIQPTLRLPSTRATPRLPSPS-QHPSLRPLRPQYLPFHPTL 366
           + QP +  PS +     PSPS ++P+  P  P YL  HPTL
Sbjct: 76  ITQPWIPTPSPKPGYPTPSPSPRYPTPSP-NPGYLHHHPTL 115


>SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRP 339
           P LRL  TR TP  PSP Q P   P  P
Sbjct: 146 PRLRLRLTRLTPPQPSPPQPPQPPPQPP 173


>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 270 ETQRRLNKQLEHMPSKLVRHMLSRLVQSMLSRLVQSMQHTLGR 142
           +TQR L KQ++H   K ++H   +  Q  L +      H  G+
Sbjct: 541 KTQRLLEKQIQHPVEKAIQHAQEKKYQPELEKKTIKSHHVPGQ 583


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 253  QPTLRLPSTRATPRLPSPSQHPSLRPLRPQYL-PFHPTLPRH 375
            QP+L  P      +LP+PSQ    R  +P YL P +  +P H
Sbjct: 2400 QPSLLAPLITVPGQLPTPSQPQGTRISQPTYLMPPNQGVPSH 2441


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = -1

Query: 542 SGMGIG-CVRG-GVSNRGC-MCGISCEWCS----MRSVSCNRCGSG 426
           SG G G C +G G   +GC  CG  C  C     MR V    CG+G
Sbjct: 264 SGKGCGTCGKGCGTCGKGCGTCGKGCGTCGAGCVMRDVMYRICGTG 309


>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
          Length = 942

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 244 LLIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369
           L   P+L+ PS R+TP   S S   S +P RP  +P  P++P
Sbjct: 271 LQTSPSLQPPSQRSTPSPQSMSALHSGKPKRPG-MPPSPSVP 311


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 247 LIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPT 363
           L +PT   P+T  TP  P+P+ H    P    + P  PT
Sbjct: 91  LTKPT---PATTPTPTKPTPTAHTPTTPTPTAHTPTKPT 126


>SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73)
          Length = 551

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHP 318
           P LRL  TR TP  PSP Q P
Sbjct: 438 PRLRLRLTRLTPPQPSPPQPP 458


>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTL 366
           P  + P+T  +P  P+P   PS  P++P   P  PT+
Sbjct: 180 PNSQAPTT-TSPTSPTPLLPPSAPPIQPVACPTSPTI 215


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 229  RHMLQLLIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHP 360
            R    L I  + R PS   +PR P  S  PS R  R    P HP
Sbjct: 3996 RESTTLAIDVSPRAPSV-TSPRTPRESDSPSTRTPRSMGYPGHP 4038


>SB_53710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 494 CMCGISCEWCSMRSVSCNRC 435
           C C +S + CS  +V CN C
Sbjct: 279 CGCAVSDDGCSTATVRCNNC 298


>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
          Length = 496

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 268 LPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369
           LPS    P  PSP ++P + P  P  L  +PTLP
Sbjct: 258 LPSPPRYP--PSPLRYPPIPPRYPPSLIRYPTLP 289


>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
          Length = 885

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 271 PSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLPRHR 378
           P     P LPS  +H +LRP +P  L F  TL  H+
Sbjct: 69  PVLPGLPSLPSDRRHGNLRPRQPVALDF--TLKGHQ 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,130,263
Number of Sequences: 59808
Number of extensions: 149466
Number of successful extensions: 732
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)