Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0721
         (542 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1527|AAF47979.1|  592|Drosophila melanogaster CG2145-PA...    31   0.77 
X97197-1|CAA65831.1|  366|Drosophila melanogaster spliceosomal p...    29   3.1  
BT023489-1|AAY84889.1|  347|Drosophila melanogaster RE50839p pro...    29   3.1  
AE014298-857|AAF46136.1|  347|Drosophila melanogaster CG3780-PA ...    29   3.1  
D50542-1|BAA09102.1|  486|Drosophila melanogaster GATA transcrip...    29   5.4  
AY071369-1|AAL48991.1|  486|Drosophila melanogaster RE40104p pro...    29   5.4  
AE014297-700|AAF54195.1|  486|Drosophila melanogaster CG9656-PA ...    29   5.4  

>AE014298-1527|AAF47979.1|  592|Drosophila melanogaster CG2145-PA
           protein.
          Length = 592

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 274 STRATPRLPSPSQHPSLRPLRPQYLPFHPTLPR 372
           STRATP  PS    PS +P  P +  + P  P+
Sbjct: 129 STRATPSHPSQPSQPSQQPPLPGFASYRPQKPQ 161


>X97197-1|CAA65831.1|  366|Drosophila melanogaster spliceosomal
           protein protein.
          Length = 366

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPT 363
           P +  P+  A P +P+P   P     RP  +PF PT
Sbjct: 318 PRMMQPNAWAPPGMPAPPPRPPPTNWRPPPVPFPPT 353


>BT023489-1|AAY84889.1|  347|Drosophila melanogaster RE50839p
           protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPT 363
           P +  P+  A P +P+P   P     RP  +PF PT
Sbjct: 299 PRMMQPNAWAPPGMPAPPPRPPPTNWRPPPVPFPPT 334


>AE014298-857|AAF46136.1|  347|Drosophila melanogaster CG3780-PA
           protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPT 363
           P +  P+  A P +P+P   P     RP  +PF PT
Sbjct: 299 PRMMQPNAWAPPGMPAPPPRPPPTNWRPPPVPFPPT 334


>D50542-1|BAA09102.1|  486|Drosophila melanogaster GATA
           transcription factor protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 QPTLRLPSTRATPRLPSPSQHPSLRP-LRPQYLPFHP 360
           Q T R+PST A+P++  P  H  L P L  ++  F P
Sbjct: 106 QHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAP 142


>AY071369-1|AAL48991.1|  486|Drosophila melanogaster RE40104p
           protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 QPTLRLPSTRATPRLPSPSQHPSLRP-LRPQYLPFHP 360
           Q T R+PST A+P++  P  H  L P L  ++  F P
Sbjct: 106 QHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAP 142


>AE014297-700|AAF54195.1|  486|Drosophila melanogaster CG9656-PA
           protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 QPTLRLPSTRATPRLPSPSQHPSLRP-LRPQYLPFHP 360
           Q T R+PST A+P++  P  H  L P L  ++  F P
Sbjct: 106 QHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAP 142


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,511,904
Number of Sequences: 53049
Number of extensions: 221245
Number of successful extensions: 1123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2074444800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)