Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0721
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022981-6|AAY86319.1|  202|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    29   1.6  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    29   1.6  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   3.8  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   3.8  

>AF022981-6|AAY86319.1|  202|Caenorhabditis elegans Hypothetical
           protein W03F9.11 protein.
          Length = 202

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 247 LIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTL 366
           +I+PT    +T   P  P P   P   P RP   PF   L
Sbjct: 111 VIKPTTTTTTTTTPPPPPPPKPSPEFLPFRPTNQPFFDDL 150


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 268 LPSTRATPRLPSPSQHP-SLRPLRPQYLPFHPTLPRHR 378
           LPST  TPR  + ++ P     + P+ +P  P +PRHR
Sbjct: 365 LPST-TTPRSTTTTEEPMKFEEVVPEVVPEKPEVPRHR 401


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 268 LPSTRATPRLPSPSQHP-SLRPLRPQYLPFHPTLPRHR 378
           LPST  TPR  + ++ P     + P+ +P  P +PRHR
Sbjct: 365 LPST-TTPRSTTTTEEPMKFEEVVPEVVPEKPEVPRHR 401


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQH-PSLRPLRPQYLPFHPTLP 369
           P + +PS++ TP  P P+Q  PS +  R Q+    P  P
Sbjct: 162 PPVSVPSSKPTPPPPPPAQQKPSFQSDREQFRTMRPLRP 200


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 244 LLIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHP-TLPR 372
           +L+QP+L L   R+ P  P     PS +  + + LP HP  LPR
Sbjct: 435 ILLQPSLPLNQLRSLPAHPLILLQPSQQQNQLRSLPAHPLILPR 478



 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 244 LLIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTL 366
           +L+QP+L     R+ P LP     PSL   + + LP HP +
Sbjct: 415 ILLQPSLPQNQLRSLPALPLILLQPSLPLNQLRSLPAHPLI 455


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 503 NRGCMCGISCEWCSMRSVSCNR 438
           NR C+ G+SCE  S   + CN+
Sbjct: 469 NRECIDGVSCEGASEEKILCNQ 490


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 503 NRGCMCGISCEWCSMRSVSCNR 438
           NR C+ G+SCE  S   + CN+
Sbjct: 469 NRECIDGVSCEGASEEKILCNQ 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,088,248
Number of Sequences: 27780
Number of extensions: 100984
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)