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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0721
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50580.1 68416.m05532 proline-rich family protein contains pr...    31   0.66 
At5g43270.3 68418.m05289 squamosa promoter-binding protein-like ...    30   0.87 
At5g43270.2 68418.m05288 squamosa promoter-binding protein-like ...    30   0.87 
At5g43270.1 68418.m05287 squamosa promoter-binding protein-like ...    30   0.87 
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    30   0.87 
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    30   0.87 
At4g30860.1 68417.m04381 SET domain-containing protein low simil...    30   1.1  
At4g32490.1 68417.m04625 plastocyanin-like domain-containing pro...    29   2.0  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    29   2.0  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    29   2.7  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    28   3.5  
At1g52855.1 68414.m05976 expressed protein                             28   3.5  
At4g01530.1 68417.m00198 hypothetical protein                          27   6.1  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    27   8.1  

>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 250 IQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTL 366
           I P+  +PST +TP  P P+   S  P  P+  P  P+L
Sbjct: 75  ISPSTPIPSTPSTPSPPPPAPKKSPPPPTPKKSPSPPSL 113



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 286 TPRL-PSPSQHPSLRPLRPQYLPFHPTLP 369
           TP+  PSP   PSL P  P+  P  P+LP
Sbjct: 121 TPKKSPSPPPTPSLPPPAPKKSPSTPSLP 149


>At5g43270.3 68418.m05289 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 236 CSSCLFNLRCVSRLQELLRACRRRLSTH 319
           C  C     C+S   E  R+CRRRLS H
Sbjct: 210 CQQCS-RFHCLSEFDEKKRSCRRRLSDH 236


>At5g43270.2 68418.m05288 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 236 CSSCLFNLRCVSRLQELLRACRRRLSTH 319
           C  C     C+S   E  R+CRRRLS H
Sbjct: 210 CQQCS-RFHCLSEFDEKKRSCRRRLSDH 236


>At5g43270.1 68418.m05287 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 236 CSSCLFNLRCVSRLQELLRACRRRLSTH 319
           C  C     C+S   E  R+CRRRLS H
Sbjct: 210 CQQCS-RFHCLSEFDEKKRSCRRRLSDH 236


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLPRH 375
           PT   PS   TP  PS +  P   P      P HP+ P H
Sbjct: 80  PTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSH 119


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLPRH 375
           PT   PS   TP  PS +  P   P      P HP+ P H
Sbjct: 80  PTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSH 119


>At4g30860.1 68417.m04381 SET domain-containing protein low
           similarity to IL-5 promoter REII-region-binding protein
           [Homo sapiens] GI:12642795; contains Pfam profile
           PF00856: SET domain
          Length = 497

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 533 GIGCVRGGVS-NRGCMCGISCEWCSMRSVSC-NRCGS 429
           G+GC   G + +R C+C + C  CS +  SC   CG+
Sbjct: 284 GVGCTNCGPNCDRSCVCRVQCISCS-KGCSCPESCGN 319


>At4g32490.1 68417.m04625 plastocyanin-like domain-containing
           protein
          Length = 221

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 286 TPRLPSPSQHPSLRPLRPQYLPFHPTLPRHR 378
           TPR PSPS  PS  P+R   L   P +P H+
Sbjct: 137 TPRHPSPSPSPSASPVRKALLSPAP-IPVHK 166


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 271 PSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369
           P +   P+LP P Q P   P +PQ  P  P LP
Sbjct: 86  PPSPPPPQLPPPPQLPPPAPPKPQPSPPTPDLP 118


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 271 PSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369
           PS+   P LP PS   SL P  PQ  P  P  P
Sbjct: 56  PSSPLPPSLPPPSPPGSLTPPLPQPSPSAPITP 88


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 244 LLIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369
           L+  PT  LPS     + PSP+  P     +P  LP  P  P
Sbjct: 30  LVSLPTPTLPSPSPATKPPSPALKPPTPSYKPPTLPTTPIKP 71


>At1g52855.1 68414.m05976 expressed protein
          Length = 68

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 488 CGISCEWCSMRSVSCNRCGSGVSRYR 411
           C I   W S R+V C+ CGS +  YR
Sbjct: 43  CFIPIYWRSWRAVVCSFCGSVLKSYR 68


>At4g01530.1 68417.m00198 hypothetical protein 
          Length = 239

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 533 GIGCVRGGVSNRGCMCGISCEWCSMRSVSCN 441
           G   V   +S+RG  C I+C+ C M   + N
Sbjct: 78  GFLAVTSKLSHRGIQCDITCKMCEMADETIN 108


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 283 ATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369
           ATP+ PSPS  P+  P  P   P  P  P
Sbjct: 274 ATPKSPSPSSSPAQSPATPS--PMTPQSP 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,769,975
Number of Sequences: 28952
Number of extensions: 94440
Number of successful extensions: 420
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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