BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0721 (542 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g50580.1 68416.m05532 proline-rich family protein contains pr... 31 0.66 At5g43270.3 68418.m05289 squamosa promoter-binding protein-like ... 30 0.87 At5g43270.2 68418.m05288 squamosa promoter-binding protein-like ... 30 0.87 At5g43270.1 68418.m05287 squamosa promoter-binding protein-like ... 30 0.87 At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 30 0.87 At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 30 0.87 At4g30860.1 68417.m04381 SET domain-containing protein low simil... 30 1.1 At4g32490.1 68417.m04625 plastocyanin-like domain-containing pro... 29 2.0 At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 29 2.0 At3g24550.1 68416.m03083 protein kinase family protein contains ... 29 2.7 At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 28 3.5 At1g52855.1 68414.m05976 expressed protein 28 3.5 At4g01530.1 68417.m00198 hypothetical protein 27 6.1 At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 27 8.1 >At3g50580.1 68416.m05532 proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 265 Score = 30.7 bits (66), Expect = 0.66 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 250 IQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTL 366 I P+ +PST +TP P P+ S P P+ P P+L Sbjct: 75 ISPSTPIPSTPSTPSPPPPAPKKSPPPPTPKKSPSPPSL 113 Score = 27.1 bits (57), Expect = 8.1 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +1 Query: 286 TPRL-PSPSQHPSLRPLRPQYLPFHPTLP 369 TP+ PSP PSL P P+ P P+LP Sbjct: 121 TPKKSPSPPPTPSLPPPAPKKSPSTPSLP 149 >At5g43270.3 68418.m05289 squamosa promoter-binding protein-like 2 (SPL2) identical to squamosa promoter binding protein-like 2 [Arabidopsis thaliana] GI:5931645; contains Pfam profile PF03110: SBP domain Length = 419 Score = 30.3 bits (65), Expect = 0.87 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 236 CSSCLFNLRCVSRLQELLRACRRRLSTH 319 C C C+S E R+CRRRLS H Sbjct: 210 CQQCS-RFHCLSEFDEKKRSCRRRLSDH 236 >At5g43270.2 68418.m05288 squamosa promoter-binding protein-like 2 (SPL2) identical to squamosa promoter binding protein-like 2 [Arabidopsis thaliana] GI:5931645; contains Pfam profile PF03110: SBP domain Length = 419 Score = 30.3 bits (65), Expect = 0.87 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 236 CSSCLFNLRCVSRLQELLRACRRRLSTH 319 C C C+S E R+CRRRLS H Sbjct: 210 CQQCS-RFHCLSEFDEKKRSCRRRLSDH 236 >At5g43270.1 68418.m05287 squamosa promoter-binding protein-like 2 (SPL2) identical to squamosa promoter binding protein-like 2 [Arabidopsis thaliana] GI:5931645; contains Pfam profile PF03110: SBP domain Length = 419 Score = 30.3 bits (65), Expect = 0.87 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 236 CSSCLFNLRCVSRLQELLRACRRRLSTH 319 C C C+S E R+CRRRLS H Sbjct: 210 CQQCS-RFHCLSEFDEKKRSCRRRLSDH 236 >At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to protodermal factor 1 [Arabidopsis thaliana] gi|4929130|gb|AAD33869 Length = 306 Score = 30.3 bits (65), Expect = 0.87 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +1 Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLPRH 375 PT PS TP PS + P P P HP+ P H Sbjct: 80 PTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSH 119 >At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to protodermal factor 1 [Arabidopsis thaliana] gi|4929130|gb|AAD33869 Length = 306 Score = 30.3 bits (65), Expect = 0.87 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +1 Query: 256 PTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLPRH 375 PT PS TP PS + P P P HP+ P H Sbjct: 80 PTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSH 119 >At4g30860.1 68417.m04381 SET domain-containing protein low similarity to IL-5 promoter REII-region-binding protein [Homo sapiens] GI:12642795; contains Pfam profile PF00856: SET domain Length = 497 Score = 29.9 bits (64), Expect = 1.1 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = -1 Query: 533 GIGCVRGGVS-NRGCMCGISCEWCSMRSVSC-NRCGS 429 G+GC G + +R C+C + C CS + SC CG+ Sbjct: 284 GVGCTNCGPNCDRSCVCRVQCISCS-KGCSCPESCGN 319 >At4g32490.1 68417.m04625 plastocyanin-like domain-containing protein Length = 221 Score = 29.1 bits (62), Expect = 2.0 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +1 Query: 286 TPRLPSPSQHPSLRPLRPQYLPFHPTLPRHR 378 TPR PSPS PS P+R L P +P H+ Sbjct: 137 TPRHPSPSPSPSASPVRKALLSPAP-IPVHK 166 >At1g49750.1 68414.m05579 leucine-rich repeat family protein contains leucine-rich repeats, Pfam:PF00560 Length = 494 Score = 29.1 bits (62), Expect = 2.0 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 271 PSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369 P + P+LP P Q P P +PQ P P LP Sbjct: 86 PPSPPPPQLPPPPQLPPPAPPKPQPSPPTPDLP 118 >At3g24550.1 68416.m03083 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain Length = 652 Score = 28.7 bits (61), Expect = 2.7 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = +1 Query: 271 PSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369 PS+ P LP PS SL P PQ P P P Sbjct: 56 PSSPLPPSLPPPSPPGSLTPPLPQPSPSAPITP 88 >At5g14920.1 68418.m01750 gibberellin-regulated family protein similar to SP|P46689 Gibberellin-regulated protein 1 precursor {Arabidopsis thaliana}; contains Pfam profile PF02704: Gibberellin regulated protein Length = 275 Score = 28.3 bits (60), Expect = 3.5 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = +1 Query: 244 LLIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369 L+ PT LPS + PSP+ P +P LP P P Sbjct: 30 LVSLPTPTLPSPSPATKPPSPALKPPTPSYKPPTLPTTPIKP 71 >At1g52855.1 68414.m05976 expressed protein Length = 68 Score = 28.3 bits (60), Expect = 3.5 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 488 CGISCEWCSMRSVSCNRCGSGVSRYR 411 C I W S R+V C+ CGS + YR Sbjct: 43 CFIPIYWRSWRAVVCSFCGSVLKSYR 68 >At4g01530.1 68417.m00198 hypothetical protein Length = 239 Score = 27.5 bits (58), Expect = 6.1 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -1 Query: 533 GIGCVRGGVSNRGCMCGISCEWCSMRSVSCN 441 G V +S+RG C I+C+ C M + N Sbjct: 78 GFLAVTSKLSHRGIQCDITCKMCEMADETIN 108 >At5g53870.1 68418.m06701 plastocyanin-like domain-containing protein contains similarity to SP|Q02917 Early nodulin 55-2 precursor {Glycine max}; PF02298: Plastocyanin-like domain Length = 370 Score = 27.1 bits (57), Expect = 8.1 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +1 Query: 283 ATPRLPSPSQHPSLRPLRPQYLPFHPTLP 369 ATP+ PSPS P+ P P P P P Sbjct: 274 ATPKSPSPSSSPAQSPATPS--PMTPQSP 300 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,769,975 Number of Sequences: 28952 Number of extensions: 94440 Number of successful extensions: 420 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 388 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 419 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1013649368 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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