Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0720
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0TZD5 Cluster: 200 kDa antigen p200, putative; n=2; Bu...    36   0.74 
UniRef50_A0UBE8 Cluster: Putative uncharacterized protein; n=1; ...    35   1.3  
UniRef50_Q6ZMV0 Cluster: CDNA FLJ16652 fis, clone TESTI4036767; ...    34   2.3  
UniRef50_A1UHC6 Cluster: Gamma-aminobutyric acid A receptor, eps...    32   9.2  

>UniRef50_A0TZD5 Cluster: 200 kDa antigen p200, putative; n=2;
           Burkholderia cepacia complex|Rep: 200 kDa antigen p200,
           putative - Burkholderia cenocepacia MC0-3
          Length = 622

 Score = 35.9 bits (79), Expect = 0.74
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +2

Query: 329 RRQRERDDVPPHRQRPPSLRAPHAAPRAQQWTSERDVEHVGGERVECHEREQCGAQHRLA 508
           +R+R+R  V   R +   LR  H  PR Q      D EHV   R    +R Q   QHR  
Sbjct: 373 QRERDRAFVGRERAQQDRLRQRHHRPRTQPLQRAADHEHVQVAREPAQQRRQRKQQHRAD 432

Query: 509 QE 514
           ++
Sbjct: 433 EQ 434


>UniRef50_A0UBE8 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia multivorans ATCC 17616|Rep: Putative
           uncharacterized protein - Burkholderia multivorans ATCC
           17616
          Length = 578

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 365 RQRPPSLRAPHAAPRAQQWTSERDVEHVGG--ERVECHEREQCGAQH 499
           R  P   RAP AA   +   + RD  H     +R   H+R+QCG  H
Sbjct: 39  RHAPQRCRAPPAAGARRSGRAHRDAGHTAAFLDRARGHDRQQCGEHH 85


>UniRef50_Q6ZMV0 Cluster: CDNA FLJ16652 fis, clone TESTI4036767;
           n=2; Homo sapiens|Rep: CDNA FLJ16652 fis, clone
           TESTI4036767 - Homo sapiens (Human)
          Length = 325

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 332 RQRERDDVPPHR--QRPPSLRAPHAAPRAQQWTSERDVEHVGGERVECHEREQCGAQHRL 505
           R R     P HR  QR P+ RAP   PR +    +RD  H   +R   H   Q G  HR 
Sbjct: 115 RHRAPQRSPRHRAPQRDPTHRAPQRGPRHR--APQRDPTHRAPQRGPRHRAPQRGPTHRA 172

Query: 506 AQ 511
            Q
Sbjct: 173 PQ 174



 Score = 33.9 bits (74), Expect = 3.0
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 332 RQRERDDVPPHR--QRPPSLRAPHAAPRAQQWTSERDVEHVGGERVECHEREQCGAQHRL 505
           R  +RD  P HR  QR P+ RAP   PR +    +R   H   +R   H   Q G +HR 
Sbjct: 90  RAPQRD--PTHRAPQRDPTHRAPQRGPRHR--APQRSPRHRAPQRDPTHRAPQRGPRHRA 145

Query: 506 AQ 511
            Q
Sbjct: 146 PQ 147


>UniRef50_A1UHC6 Cluster: Gamma-aminobutyric acid A receptor,
           epsilon; n=1; Mycobacterium sp. KMS|Rep:
           Gamma-aminobutyric acid A receptor, epsilon -
           Mycobacterium sp. (strain KMS)
          Length = 307

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +2

Query: 338 RERDDVPPHRQRPPSLRAPHAAPRAQQWTSERDVEHVGGERVECHEREQCGAQHRLAQE 514
           RE  +  PH+Q PP  +A   AP A         +    E  E    +Q     + AQE
Sbjct: 245 REAPEASPHQQAPPPQQAAREAPEASPHQQAPPPQQAAQEAPEASPHQQAPPPQQAAQE 303


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,319,240
Number of Sequences: 1657284
Number of extensions: 4364374
Number of successful extensions: 17273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17242
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)