Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0720
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0506 - 18188785-18190599                                         28   5.0  
05_01_0447 + 3554146-3554183,3554295-3554608,3555201-3555328,355...    28   5.0  
12_02_0240 - 16174724-16174927,16175005-16175097,16175199-161752...    28   6.6  
12_01_0633 - 5241098-5241283,5241361-5241453,5241555-5241615,524...    27   8.7  
11_01_0639 - 5128139-5128159,5128237-5128329,5128431-5128491,512...    27   8.7  

>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 338 RERDDVPPHRQRPPSLRAPHAAPRAQQ 418
           +++   PP  Q+PP L+AP   P+ QQ
Sbjct: 59  QQQQQPPPISQQPPPLQAPPPPPQQQQ 85


>05_01_0447 +
           3554146-3554183,3554295-3554608,3555201-3555328,
           3555623-3555898,3556076-3556206,3556792-3556909,
           3556980-3557072,3557649-3557723,3557813-3557890,
           3558020-3558031
          Length = 420

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 391 CAEGGGPLTVRGDVVTLAL-APPLDDVL 311
           C  GG  +   GDVV +A+ APP  D+L
Sbjct: 253 CGSGGSVIDQHGDVVGMAIGAPPNPDIL 280


>12_02_0240 -
           16174724-16174927,16175005-16175097,16175199-16175258,
           16175708-16175789,16175873-16176075,16176222-16177226,
           16177371-16177643
          Length = 639

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 323 EWRRQRERDDVPPHRQRPPSLRAPHAAPRAQQWTSERDVEHVG 451
           E RR ++  ++    + P  L +   AP+ +QWT E ++   G
Sbjct: 47  EIRRSQKYAELAKKNKFPHRLGSAGYAPKVEQWTKEEEMRKAG 89


>12_01_0633 -
           5241098-5241283,5241361-5241453,5241555-5241615,
           5241703-5241813,5241960-5242145,5242229-5242590,
           5242730-5243152,5243159-5244382,5244468-5244707
          Length = 961

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 323 EWRRQRERDDVPPHRQRPPSLRAPHAAPRAQQWTSERDVEHVGGERVECHEREQ 484
           E +R ++  ++    + P  L +   AP+ +QWT E +     G+ V   E  Q
Sbjct: 258 EIKRSQKYSELAKKNKFPHRLGSAGYAPKVEQWTKEEEEMRKKGQPVPMEEWTQ 311


>11_01_0639 -
           5128139-5128159,5128237-5128329,5128431-5128491,
           5128579-5128689,5128770-5129021,5129105-5129440,
           5129486-5131140,5131316-5131555
          Length = 922

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 323 EWRRQRERDDVPPHRQRPPSLRAPHAAPRAQQWTSERDVEHVGGERVECHEREQ 484
           E +R ++  ++    + P  L +   AP+ +QWT E +     G+ V   E  Q
Sbjct: 228 EIKRSQKYSELAKKNKFPHRLGSAGYAPKVEQWTKEEEEMRKKGQPVPMEEWTQ 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,606
Number of Sequences: 37544
Number of extensions: 138898
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)