Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0720
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF067216-12|AAL02459.1|  403|Caenorhabditis elegans Hypothetical...    28   5.9  
AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    28   5.9  

>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
           protein F33H1.4 protein.
          Length = 1385

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 332 RQRERDDVPPHRQRPPSLRAPHAAPRAQQWTSERD 436
           R R  + +PPHR+  P    P   P  ++ +S+RD
Sbjct: 267 RGRPANPIPPHRRPVPKDLVPPGFPSLKRASSQRD 301


>U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical
           protein K10B2.5 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 326 WRRQRERDDVPPHRQRPPSLRAPHAAPRAQQWTS 427
           +RR+      PP  + PP + +P  + R+ +WTS
Sbjct: 2   YRRENINFSHPPQLKSPPPMSSPLDSNRSYRWTS 35


>AF067216-12|AAL02459.1|  403|Caenorhabditis elegans Hypothetical
           protein C35E7.2b protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 302 NVAEYIVEWRRQRERDDVPPHRQRPPSLRAPHAAP 406
           N+ + I+++ + +E+   PPH Q    +  PH  P
Sbjct: 148 NLFKQIIDFEKPKEQFTAPPHPQMTHRVAQPHYVP 182


>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 302 NVAEYIVEWRRQRERDDVPPHRQRPPSLRAPHAAP 406
           N+ + I+++ + +E+   PPH Q    +  PH  P
Sbjct: 452 NLFKQIIDFEKPKEQFTAPPHPQMTHRVAQPHYVP 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,760,231
Number of Sequences: 27780
Number of extensions: 95562
Number of successful extensions: 324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)