Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0720
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26932.1 68416.m03370 double-stranded RNA-binding domain (DsR...    27   7.3  
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel...    27   9.6  

>At3g26932.1 68416.m03370 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 301

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 510 KSMAQEAVHRAGLDLHHQNTRRSTAIAQAHIP 605
           K++ QE  HRAGLDL    + RS      HIP
Sbjct: 31  KNLLQETAHRAGLDLPVYTSVRS---GPGHIP 59


>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
           putative (CNGC15) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 323 EWR-RQRERDDVPPHRQRPPSLRAPHAAPRAQQWTSERDVE 442
           EWR R+ + +    HRQ PP LR         +W + R V+
Sbjct: 401 EWRIRRTDTEQWMHHRQLPPELRQAVRKYDQYKWLATRGVD 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,385,309
Number of Sequences: 28952
Number of extensions: 89034
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)