Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0719
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 62 8e-11
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 54 1e-08
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 28 0.91
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 27 2.8
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 27 2.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 3.7
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 3.7
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 4.9
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 6.4
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.5
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 61.7 bits (143), Expect = 8e-11
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 IVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRVVAEALKRS 433
++ QVEFYFSD N+ D FL ++N +G+V ++ I++FKR++ + + AL++S
Sbjct: 67 VLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQTIANFKRMRRF-QPLEAIVNALRKS 124
Query: 434 TKL-EINELGTKLRRIDPLPAYD 499
+L E++E G K+RR+ PL D
Sbjct: 125 PELLEVDEAGEKVRRMIPLVRVD 147
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +2
Query: 254 IVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRVVAEALKRS 433
+ SQ+E+YFS N+ KD FL KH+ + EGYV L ++SF R+K + D ++ A K S
Sbjct: 329 LTSQLEYYFSIENLCKDMFLRKHM--DDEGYVPLAFLASFNRIKSFSTDLNLLHAACKAS 386
Query: 434 TKLEI 448
+++
Sbjct: 387 DIIDV 391
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 445 LQLSRALQGFSDHPPVFREVLDALEARDQLERDVTFLIPS 326
L LSR LQ +SD +F +L +E L RD+ ++P+
Sbjct: 33 LPLSRLLQ-YSDKQQLFTILLQCVEKHPDLARDIRGILPA 71
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 323 VRRNKEGYVSLKLISSFKRVKHLTKDWRVVAEALKRS 433
V+ G ++ ++ +F +TKDW+ E LK S
Sbjct: 376 VKHGPIGVIATTMMDAFATADTITKDWKSKKEFLKNS 412
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 194 VATETQEPPYTPPDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSL 355
V+ Q P DE+L+ + S + +DA+++ ++ +N E YVS+
Sbjct: 330 VSRSLQLSPCLTDDEQLSKSLTSFKQVNVTDASLSPNSHNTSDNEQNNEDYVSV 383
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 35 RGSHMEGTSPSS-PRPNEDEGFATDRRP 115
+G H +G S P+P +D F D RP
Sbjct: 158 KGKHAKGKGKKSHPKPEDDSVFFDDERP 185
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 456 NSLISNLVERFKASATTRQSFVRCLTRLKL 367
N+L SN+ E S T R S V C T LK+
Sbjct: 39 NNLKSNIFEHNNNSPTLRSSSVACNTCLKI 68
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 497 DETTPSRTVVAVRMPVEKPSVENV----SRLFAGCGEIA 601
DE PS ++ +P+E+PS E+ + AGCG +A
Sbjct: 668 DEKAPSMGAKSLCIPLEQPSGEDAIIEGTTKCAGCGNLA 706
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 221 YTPPDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNK 337
+ P+E+L NRI + + + FS + D + ++ V NK
Sbjct: 393 FPDPEEDLINRIYASLGYRFSPEEV--DFYYVRKVAPNK 429
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 435 VERFKASATTRQSFVRCLTRLKLEIS 358
V R A++R +FVRC+T KL+ S
Sbjct: 93 VRRKMLYASSRAAFVRCVTLAKLDES 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,786
Number of Sequences: 5004
Number of extensions: 35082
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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