Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0719
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      67   1e-11
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    60   2e-09
SB_34185| Best HMM Match : DegS (HMM E-Value=0.45)                     29   2.9  
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   5.1  
SB_8122| Best HMM Match : DUF573 (HMM E-Value=6.3)                     28   6.7  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 27   8.8  
SB_31519| Best HMM Match : DUF1458 (HMM E-Value=2.9)                   27   8.8  
SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)                   27   8.8  

>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 27/68 (39%), Positives = 48/68 (70%)
 Frame = +2

Query: 242 LANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRVVAEA 421
           L N++  Q++FYFSD+ + KD FL + +  + +GYV++  I+SF ++K +T D ++V +A
Sbjct: 25  LVNQLKEQIDFYFSDSALLKDRFLKQQIENHPDGYVAISTIASFNKIKQMTDDIKLVKKA 84

Query: 422 LKRSTKLE 445
           +K S +LE
Sbjct: 85  MKLSQQLE 92


>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
 Frame = +2

Query: 197 ATETQEPPYTPPDEE-LANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSF 373
           A +TQ     P DE+ L   I  Q+E+YFS+AN+ KD FL K +  + EGY+ + LI+SF
Sbjct: 105 AAQTQPFVPVPMDEKTLQEYIKRQIEYYFSEANLHKDFFLRKQM--DDEGYIPIALIASF 162

Query: 374 KRVKHLTKDWRVVAEALK 427
            RV+ LT D  ++ E ++
Sbjct: 163 YRVQALTHDMNLILEEME 180


>SB_34185| Best HMM Match : DegS (HMM E-Value=0.45)
          Length = 348

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +2

Query: 230 PDEELANRIVSQ-VEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWR 406
           P  EL  +I+ + +    ++  +++    + H+R+        +++ + +R + L K+  
Sbjct: 237 PLHELKQQIIKKRIHVSDTEKRLSRSTIDIDHIRK--------EIVGNVRRTEKLQKE-N 287

Query: 407 VVAEALKRSTKLEINELGTKLRRIDPLPAYDE 502
              E L+ S+++   E+ TKL ++ P P   E
Sbjct: 288 AELETLETSSRMSCKEVETKLEQVRPQPPEGE 319


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +2

Query: 416  EALKRSTKLEINELGTKLRRIDPLP----AYDETTPSRTVVAVRMPVEKPSVENVSRLFA 583
            +  K   K   NELG+K+RRI+ +      Y+        +  +M   K  V+   RL  
Sbjct: 1114 DQFKEKAKKLTNELGSKIRRIEIIERETITYENLIDELRELRKKMVALKAEVKKKYRLVT 1173

Query: 584  GC 589
            GC
Sbjct: 1174 GC 1175


>SB_8122| Best HMM Match : DUF573 (HMM E-Value=6.3)
          Length = 579

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 350 SLKLISSFKRVKHLTKDWRVVAEALKRSTKLEINELGTKLRRI 478
           SL +IS  +R+ H  +D+   + AL+   K     +GTKLRRI
Sbjct: 107 SLSVISDLQRLPHDFRDFMNNSRALQEHLK----NIGTKLRRI 145


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 2    RAPRLLCDRVLRGSHMEGTSPSSPRPNEDEGFATDRRP 115
            R P++ CD    GS MEG++ +  + N+ E  +T  RP
Sbjct: 1020 RGPQVNCDVTTSGSPMEGSTGTGVQ-NKPETISTTDRP 1056


>SB_31519| Best HMM Match : DUF1458 (HMM E-Value=2.9)
          Length = 168

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 230 PDEELANRIVSQ-VEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISS 370
           P++EL  R+ S  ++ YF++A +         +  +K+G+V  +L SS
Sbjct: 77  PEKELNERLDSLCIKKYFTEAQVIHGISSFHCIEPDKDGFVKCRLYSS 124


>SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)
          Length = 302

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 230 PDEELANRIVSQ-VEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISS 370
           P++EL  R+ S  ++ YF++A +         +  +K+G+V  +L SS
Sbjct: 211 PEKELNERLDSLCIKKYFTEAQVIHGISSFHCIEPDKDGFVKCRLYSS 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,805,383
Number of Sequences: 59808
Number of extensions: 299116
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)