Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0719
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 71 5e-13
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 71 5e-13
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 60 2e-09
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 60 2e-09
AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical ... 51 7e-07
AF099927-2|AAZ32796.1| 116|Caenorhabditis elegans Hypothetical ... 30 1.5
AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical ... 30 1.5
U28739-9|AAB93451.1| 480|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical pr... 27 7.8
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr... 27 7.8
AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein. 27 7.8
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 27 7.8
AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical ... 27 7.8
AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical ... 27 7.8
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 71.3 bits (167), Expect = 5e-13
Identities = 36/89 (40%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Frame = +2
Query: 215 PPYTP---PDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVK 385
PP P D+ L + Q+E+YFS+ N+ KD FL + + EGY+ + LI+SF RV+
Sbjct: 311 PPTAPRPVTDDTLKEYVRKQIEYYFSEENLQKDFFLRR--KMGPEGYLPVALIASFPRVR 368
Query: 386 HLTKDWRVVAEALKRSTKLEINELGTKLR 472
LT+D+ ++ EALK STK++++ G ++R
Sbjct: 369 SLTEDYSLILEALKDSTKVDMSPDGLQIR 397
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 71.3 bits (167), Expect = 5e-13
Identities = 36/89 (40%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Frame = +2
Query: 215 PPYTP---PDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVK 385
PP P D+ L + Q+E+YFS+ N+ KD FL + + EGY+ + LI+SF RV+
Sbjct: 508 PPTAPRPVTDDTLKEYVRKQIEYYFSEENLQKDFFLRR--KMGPEGYLPVALIASFPRVR 565
Query: 386 HLTKDWRVVAEALKRSTKLEINELGTKLR 472
LT+D+ ++ EALK STK++++ G ++R
Sbjct: 566 SLTEDYSLILEALKDSTKVDMSPDGLQIR 594
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/88 (32%), Positives = 52/88 (59%)
Frame = +2
Query: 215 PPYTPPDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLT 394
PP EE+ + +Q+E+YFS N++ D +L + + + YV + +++ F ++ LT
Sbjct: 129 PPPPLSREEIKQLLKNQLEYYFSRENLSSDRYL--KCQMDSDNYVPINVLAGFPKIMRLT 186
Query: 395 KDWRVVAEALKRSTKLEINELGTKLRRI 478
D ++ EALK ST +E++E K+R I
Sbjct: 187 TDVDLIVEALKESTNVELDEKFEKVRAI 214
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/88 (32%), Positives = 52/88 (59%)
Frame = +2
Query: 215 PPYTPPDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLT 394
PP EE+ + +Q+E+YFS N++ D +L + + + YV + +++ F ++ LT
Sbjct: 31 PPPPLSREEIKQLLKNQLEYYFSRENLSSDRYL--KCQMDSDNYVPINVLAGFPKIMRLT 88
Query: 395 KDWRVVAEALKRSTKLEINELGTKLRRI 478
D ++ EALK ST +E++E K+R I
Sbjct: 89 TDVDLIVEALKESTNVELDEKFEKVRAI 116
>AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical
protein C44E4.4 protein.
Length = 396
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/87 (27%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +2
Query: 236 EELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRVVA 415
++ +I+ Q+E+YF + N+ +D FL + ++ + +G+V + + +F R+ ++KD +A
Sbjct: 10 DDADQKIIKQLEYYFGNINLPRDKFLQEKLKED-DGWVPITTMLNFNRLASISKDTEKIA 68
Query: 416 EALKRSTK--LEINELGTKLRRIDPLP 490
A+K S + ++E K+RR + P
Sbjct: 69 NAVKNSGSGIISVSEDNQKIRRNEENP 95
>AF099927-2|AAZ32796.1| 116|Caenorhabditis elegans Hypothetical
protein T04C4.1c protein.
Length = 116
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 2 RAPRLLCDRVLRGSHMEGTSPSSPRPNEDEGFATDRRPST 121
RA R D S + SP+SPRP+ + F PST
Sbjct: 10 RAKRRKTDSSSEESDHQFASPTSPRPSSSDSFGPSAAPST 49
>AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical
protein T04C4.1a protein.
Length = 955
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 2 RAPRLLCDRVLRGSHMEGTSPSSPRPNEDEGFATDRRPST 121
RA R D S + SP+SPRP+ + F PST
Sbjct: 10 RAKRRKTDSSSEESDHQFASPTSPRPSSSDSFGPSAAPST 49
>U28739-9|AAB93451.1| 480|Caenorhabditis elegans Hypothetical
protein C17G10.1 protein.
Length = 480
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 359 LISSFKRVKHLTKDWRVVAEALKRSTKLEINELGTKLRRIDP 484
L +SF + K W VAE L +L IN RRI+P
Sbjct: 205 LRNSFMLFEVSEKSWHRVAEMLSEEPRLSINGWFHSTRRIEP 246
>Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 358 LERDVTFLIPSDVFEQKRIFRNIRV 284
L+ DV F +P + FEQ + +NIR+
Sbjct: 34 LQNDVDFNLPIEAFEQGNMDQNIRI 58
>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
M03A8.2 protein.
Length = 2275
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 371 FKRVKHLTKDWRVVAEALKRSTKLEINELGTKLRRIDPL 487
F+R H +D + + ++ + LEI EL +L RI+ L
Sbjct: 1746 FERDAHSDEDEEEIIDPIQMAAALEIRELNEELGRIEQL 1784
>AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein.
Length = 459
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 520 CGGCQNACRKAVCRERIPFVCWLRRDC 600
C GC+ ++++ R+RI +VC ++DC
Sbjct: 45 CEGCKGFFKRSI-RKRIGYVCRSQKDC 70
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 520 CGGCQNACRKAVCRERIPFVCWLRRDC 600
C GC+ ++++ R+RI +VC ++DC
Sbjct: 169 CEGCKGFFKRSI-RKRIGYVCRSQKDC 194
>AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 358 LERDVTFLIPSDVFEQKRIFRNIRV 284
L+ DV F +P + FEQ + +NIR+
Sbjct: 34 LQNDVDFNLPIEAFEQGNMDQNIRI 58
>AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical
protein F21A10.2b protein.
Length = 947
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 358 LERDVTFLIPSDVFEQKRIFRNIRV 284
L+ DV F +P + FEQ + +NIR+
Sbjct: 32 LQNDVDFNLPIEAFEQGNMDQNIRI 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,051,925
Number of Sequences: 27780
Number of extensions: 212558
Number of successful extensions: 705
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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