Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0719
(604 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 91 4e-19
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 91 4e-19
At2g43970.2 68415.m05468 La domain-containing protein contains P... 82 2e-16
At2g43970.1 68415.m05467 La domain-containing protein contains P... 82 2e-16
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 80 1e-15
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 68 4e-12
At1g79880.1 68414.m09333 La domain-containing protein contains P... 62 4e-10
At5g66100.1 68418.m08327 La domain-containing protein similar to... 59 3e-09
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 58 3e-09
At4g35890.1 68417.m05097 La domain-containing protein contains P... 55 4e-08
At5g02710.1 68418.m00210 expressed protein contains Pfam PF03692... 29 2.4
At1g78230.1 68414.m09116 leucine-rich repeat family protein 29 3.1
At4g30120.1 68417.m04282 ATPase E1-E2 type family protein / heav... 28 5.5
At4g26880.1 68417.m03868 stigma-specific Stig1 family protein si... 28 5.5
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 5.5
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 5.5
At5g59070.1 68418.m07401 glycosyl transferase family 1 protein c... 27 9.6
At2g17695.1 68415.m02049 expressed protein 27 9.6
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 91.5 bits (217), Expect = 4e-19
Identities = 47/123 (38%), Positives = 73/123 (59%)
Frame = +2
Query: 230 PDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRV 409
P +EL +I+ QVE+YFSD N+ D FLL ++RNK+G+V + I++F ++K LT+D +
Sbjct: 99 PIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHAL 158
Query: 410 VAEALKRSTKLEINELGTKLRRIDPLPAYDETTPSRTVVAVRMPVEKPSVENVSRLFAGC 589
+ ALK S+ L ++ K++R+ PLP + P V V E S EN+ +F
Sbjct: 159 IVSALKESSFLVVSADEKKVKRLSPLPEIRD--PKIFTVLVENLPEDHSNENIREIFGKA 216
Query: 590 GEI 598
G I
Sbjct: 217 GSI 219
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 91.5 bits (217), Expect = 4e-19
Identities = 47/123 (38%), Positives = 73/123 (59%)
Frame = +2
Query: 230 PDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRV 409
P +EL +I+ QVE+YFSD N+ D FLL ++RNK+G+V + I++F ++K LT+D +
Sbjct: 99 PIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHAL 158
Query: 410 VAEALKRSTKLEINELGTKLRRIDPLPAYDETTPSRTVVAVRMPVEKPSVENVSRLFAGC 589
+ ALK S+ L ++ K++R+ PLP + P V V E S EN+ +F
Sbjct: 159 IVSALKESSFLVVSADEKKVKRLSPLPEIRD--PKIFTVLVENLPEDHSNENIREIFGKA 216
Query: 590 GEI 598
G I
Sbjct: 217 GSI 219
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 82.2 bits (194), Expect = 2e-16
Identities = 42/122 (34%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +2
Query: 236 EELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRVVA 415
E+ +IV+QVE+YFSD N+ L++ + ++ EGYV + +++SFK++K + + +A
Sbjct: 191 EDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLA 250
Query: 416 EALKRSTKLEINELGTKLRRIDPL-PAYDETTPSRTVVAVRMPVEKPSVENVSRLFAGCG 592
L+ S KL ++E G K+RRI P+ + E SR +VA +P E +N+ ++F+ G
Sbjct: 251 AVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLP-EDHCYQNLMKIFSTVG 309
Query: 593 EI 598
+
Sbjct: 310 SV 311
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 82.2 bits (194), Expect = 2e-16
Identities = 42/122 (34%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +2
Query: 236 EELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRVVA 415
E+ +IV+QVE+YFSD N+ L++ + ++ EGYV + +++SFK++K + + +A
Sbjct: 191 EDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLA 250
Query: 416 EALKRSTKLEINELGTKLRRIDPL-PAYDETTPSRTVVAVRMPVEKPSVENVSRLFAGCG 592
L+ S KL ++E G K+RRI P+ + E SR +VA +P E +N+ ++F+ G
Sbjct: 251 AVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLP-EDHCYQNLMKIFSTVG 309
Query: 593 EI 598
+
Sbjct: 310 SV 311
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 79.8 bits (188), Expect = 1e-15
Identities = 42/122 (34%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Frame = +2
Query: 236 EELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRVVA 415
++L +IV QVE+ F+D ++ + + KH+ ++ EGYV + I+S K++K LT + +V+
Sbjct: 142 DDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVS 201
Query: 416 EALKRSTKLEINELGTKLRRIDPLPAYD-ETTPSRTVVAVRMPVEKPSVENVSRLFAGCG 592
AL+ S+KL ++E G K++R D E RTVVA +P + S +N+ ++F G
Sbjct: 202 LALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLP-DDHSYQNLEKIFGVVG 260
Query: 593 EI 598
+
Sbjct: 261 NV 262
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 68.1 bits (159), Expect = 4e-12
Identities = 39/110 (35%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Frame = +2
Query: 209 QEPPYTPPDE-ELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVK 385
Q PP P++ +L +R++ QVE+YFSD N+ D +L+ + ++EG+V K+I+ FKRVK
Sbjct: 266 QGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLM--DEEGWVPTKIIAGFKRVK 323
Query: 386 HLTKDWRVVAEALKRSTKLEINELGTKLRRIDP----LPAYDETTPSRTV 523
+T D + AL S +E+ G ++R+ D +PA ++T + T+
Sbjct: 324 AMTMDVDFIVYALGFSNSVEVQ--GDQIRKRDKWSDWIPASKKSTSAETI 371
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 61.7 bits (143), Expect = 4e-10
Identities = 26/53 (49%), Positives = 41/53 (77%)
Frame = +2
Query: 233 DEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHL 391
+EE A ++++QVEFYFSD+N+ D FL + V ++K+G VSL L+ SF R+++L
Sbjct: 6 NEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNL 58
>At5g66100.1 68418.m08327 La domain-containing protein similar to
SP|P40796 La protein homolog (La ribonucleoprotein) (La
autoantigen homolog) {Drosophila melanogaster}; contains
Pfam profile PF05383: La domain
Length = 453
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/81 (39%), Positives = 53/81 (65%)
Frame = +2
Query: 233 DEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRVV 412
D L N+I++QVE+YFS N+++D L + N EG+V +++I++F+R+ LT + + +
Sbjct: 332 DAILYNKILTQVEYYFSADNLSRDEHLRDQM--NDEGWVPVRVIAAFRRLAELTNNIQTI 389
Query: 413 AEALKRSTKLEINELGTKLRR 475
EAL+ S +EI G LRR
Sbjct: 390 LEALRSSEVVEIQ--GETLRR 408
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 58.4 bits (135), Expect = 3e-09
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Frame = +2
Query: 236 EELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTK------ 397
EE A ++ QVEFYFSD+N+ D FL K V +++G VSL LI SF +++ K
Sbjct: 8 EETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKG 67
Query: 398 ------DWRVVAEALKRSTKLEINELGTKLRRIDPLPAYD---ETTPSRTVVAVRMPVEK 550
+ VA+ L+ S+ L+I++ G K+ R L + E +RTV A +
Sbjct: 68 DDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSYDV 127
Query: 551 PSVENVSRLFAGCGEI 598
E+V F+ G++
Sbjct: 128 KR-EDVESFFSQYGKV 142
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/87 (33%), Positives = 51/87 (58%)
Frame = +2
Query: 221 YTPPDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKD 400
Y D L ++ Q+++YFSD N+ D +L + N EG+V L++++ FK+V LT +
Sbjct: 362 YHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFM--NNEGFVPLRVVAGFKKVAELTDN 419
Query: 401 WRVVAEALKRSTKLEINELGTKLRRID 481
+ + EAL+ S +E+ G +R+ D
Sbjct: 420 IQQIVEALQNSPHVEVQ--GDFIRKRD 444
>At5g02710.1 68418.m00210 expressed protein contains Pfam PF03692:
Uncharacterised protein family (UPF0153)
Length = 176
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 603 RAISPQPANKRDTFSTDGFSTG 538
+A +PANKR T ST GFS G
Sbjct: 29 KAKKVKPANKRPTMSTSGFSGG 50
>At1g78230.1 68414.m09116 leucine-rich repeat family protein
Length = 676
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 364 DQLERDVTFLIPSDVFEQKRIFRNIRVREVKLD 266
DQL + V+ L+P V+ K++ + R REV D
Sbjct: 580 DQLRKTVSSLLPKLVYHNKQLIKPQRAREVLKD 612
>At4g30120.1 68417.m04282 ATPase E1-E2 type family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux ATPase [Streptococcus thermophilus]
GI:22416341; contains Pfam profile PF00122: E1-E2 ATPase
Length = 542
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 443 EINELGTKLRRIDPLPAYDETTPSRTVVAV 532
E++ +G LR++D + + PSRTV+ V
Sbjct: 27 EVSIVGNVLRQVDGVKEFSVIVPSRTVIVV 56
>At4g26880.1 68417.m03868 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 152
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 517 DCGGCQNACR--KAVCRERIPFVCWLRRDC 600
+CG C+N C+ + CR + +V + +R C
Sbjct: 102 NCGACKNKCKFSQTCCRGQCVYVAYDKRHC 131
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 290 SRPRSKTRLVTQFCSLIPRPVAYRAVPGSRLQLRSLNPCRRRSRHQTPSP 141
SR RS++R S + PG R + RS +P R RSR ++P P
Sbjct: 227 SRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLP 276
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 290 SRPRSKTRLVTQFCSLIPRPVAYRAVPGSRLQLRSLNPCRRRSRHQTPSP 141
SR RS++R S + PG R + RS +P R RSR ++P P
Sbjct: 227 SRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLP 276
>At5g59070.1 68418.m07401 glycosyl transferase family 1 protein
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 505
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 203 ETQEPPYTPPDEELANRIVSQVEFY 277
E Q PP +P E A R+V +V+F+
Sbjct: 228 EEQPPPSSPALTERAKRVVEEVKFF 252
>At2g17695.1 68415.m02049 expressed protein
Length = 205
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +2
Query: 284 DANITKDAFLLKHVR----RNKEGYVSLKLISSFKRVKHLTKDWRVVAEA 421
D+ I KD FL+ H R +E Y K + + KH DW V A
Sbjct: 44 DSEIDKDGFLINHARVLVGSGRESYEKGK--KALQNWKHFGMDWAFVDPA 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,560,691
Number of Sequences: 28952
Number of extensions: 204736
Number of successful extensions: 719
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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