Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0718
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    30   0.37 
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    29   0.64 
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    28   1.5  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   4.5  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   6.0  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   6.0  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   7.9  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   7.9  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -3

Query: 448 LSAATTYGTILFPGGANKCLHYIVMLFLKIFSKHQYWFWENSTARHPAPAPRGLTCVV 275
           LSAA + GT+LF      CLH     FL   +    W W+    + P P P G   +V
Sbjct: 470 LSAALSLGTVLF------CLH----TFLCDSTVLMTWSWDGYPIKGPQPYPHGAVSIV 517


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 228 QKNNYQPLRTPDKHQCSIHAQMLTSFLTPYLKGDLLLNIYAVLTSDTCRGYVSRPTYT 55
           +++N QP+RTP      IH Q         + G+L    Y  +     RGY S  T+T
Sbjct: 35  EESNIQPVRTPVTVCGDIHGQFYDLLELFRVGGELPSTNYIFMGDFVDRGYFSLETFT 92


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 316 VLCYFPKTSIDASKIFSKITSLCNVNIYWRPPEIISCRMSWRQTACR 456
           V C   +  ++A KI  + T L ++    + P  I C   W++  CR
Sbjct: 250 VECDISRCPLNACKIAGQETELADLFSLQKVPACIYCLREWKKPICR 296


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 266 LQGWVSPPRYFEPKRIIISHYVLQTNISVQF 174
           L+G V+ P YF P  I +  ++LQ +I+ ++
Sbjct: 410 LEGKVNYPSYFSPASIDLLSHLLQRDITCRY 440


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 505 HGQTSRAVPSPPHGTADGMLS 443
           HGQTS   P PP  T  G++S
Sbjct: 430 HGQTSPLSPIPPVHTTHGLVS 450


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -3

Query: 394 CLHYIVMLFLKIFSKHQYWFWENSTARHPAPAPRGLTCVVAGSSRAG 254
           CL ++VMLF ++   + Y+++     +        L  V+ G+   G
Sbjct: 267 CLGFLVMLFRELIGNNYYFYYATQVFKGTGMTDIFLPAVILGAINFG 313


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 393 HLLAPPGNNIVPYVVAADSMPSAVPCGGDGT 485
           HL +P G   + +    D + + VPC GDGT
Sbjct: 222 HLSSPDGKKFLKF----DRILADVPCSGDGT 248


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +1

Query: 307 QDAVLCYF---PKTSIDASKIFSKITSLC 384
           Q A+LC      KTS+  + +F K +SLC
Sbjct: 480 QKAILCTLVVCEKTSLSVADVFEKYSSLC 508


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 25/101 (24%), Positives = 46/101 (45%)
 Frame = +1

Query: 262 WSSQPRHK*APAAPVQDAVLCYFPKTSIDASKIFSKITSLCNVNIYWRPPEIISCRMSWR 441
           W+  P  K  P++ + D+ L   P +     K  S  T+    NI    P++I+     R
Sbjct: 230 WNGPPIDKSLPSSEM-DSNLQTNPSSISKGKKNNSNNTTQKGPNII-SSPQVINASSPVR 287

Query: 442 QTACRQRCHAGETAPLSTSVRVRAHTNSATRVLRVASSWPK 564
           +   ++   A  T+PLS+S    ++ + +     VA+S P+
Sbjct: 288 KAGKKKSKKALPTSPLSSSSPDASYNSVSDSFHTVAASVPE 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,562
Number of Sequences: 5004
Number of extensions: 68468
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)