Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0718
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0809 + 24814590-24816593 34 0.12
01_06_0778 - 31920956-31921502,31921639-31921771,31922287-319223... 30 1.5
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 30 2.0
02_05_0979 + 33268294-33269595 30 2.0
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169 29 2.7
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214... 29 3.5
05_01_0260 - 1993075-1994312,1996249-1997191 29 3.5
04_03_0266 + 13648287-13649099,13649186-13649524 29 3.5
12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260... 29 4.7
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493... 29 4.7
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021... 29 4.7
08_01_0719 + 6386831-6386984,6387344-6387499,6387513-6387838 28 6.2
01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162 28 6.2
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 28 8.2
01_06_0138 + 26865895-26865953,26866628-26867870 28 8.2
01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285 28 8.2
01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319 28 8.2
>06_03_0809 + 24814590-24816593
Length = 667
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 414 NNIVPYVVAADSMPSAVPCGGDGTALDVCPCAC 512
N VP V AA+S+P + P DG L PCAC
Sbjct: 81 NASVPAVAAANSVPVSPPVARDGLLLVPVPCAC 113
>01_06_0778 -
31920956-31921502,31921639-31921771,31922287-31922374,
31922857-31923198
Length = 369
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 616 DSNTGASLDTNAPGRLIL*ATTKLPAVHAS-HCWCAHAHGQ 497
D G L + P L+L +K+P+ H CWC + HG+
Sbjct: 268 DPQDGKRLSNSIPSSLVL--NSKVPSWHEHLQCWCLNFHGR 306
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 481 PSPPHGTADGMLSAATTYGTILFPGGANKCLHYIVMLFLKIFSKHQ-YWFW 332
P P+ ADG+L A +L K LHY+ L+L+ ++ + W W
Sbjct: 89 PDSPYIRADGLLRAECNVEDLLNIVDFAKSLHYVGFLYLRYVAEPKTLWSW 139
>02_05_0979 + 33268294-33269595
Length = 433
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = -3
Query: 499 QTSRAVPSPPHGTADGMLSAATTYGTILFPGGANKCLHYIVMLFLKIFSKHQYWFWENST 320
Q +P PP + M + +GTI FP + C H +V+L KI H ++ W ST
Sbjct: 94 QWQHLIPRPP--VEEIMTARHLPHGTI-FPLASKSC-HGLVLL--KITGHHTHYLWNPST 147
Query: 319 ARH 311
RH
Sbjct: 148 -RH 149
>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
Length = 515
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 310 PAPAPRGLTCVVAGSSRAGYLRLDTLSPKE*LSAITYSRQTSVFNSRSNVDIVFN-SIFE 134
P P+ L VV GS YL DTL ++ LS++ S+ S + ++ N S E
Sbjct: 445 PLPSACSLAPVVGGSDFISYLPHDTLYDRDVLSSVV-SQSMKGLQSGGGLGLLGNCSNLE 503
Query: 133 GRL 125
GRL
Sbjct: 504 GRL 506
>07_03_1607 +
28119886-28120239,28121097-28121153,28121377-28121464,
28121557-28121686,28121783-28121962,28122291-28122759
Length = 425
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 619 RDSNTGASLDTNAPGRLIL*ATTKLPAVHAS-HCWCAHAHGQTSRA 485
R +N+ ASL T +L+L K P H CWC + HG+ + A
Sbjct: 319 RANNSTASLLTQNGSKLVL--KNKSPRWHEHLQCWCLNFHGRVTVA 362
>05_01_0260 - 1993075-1994312,1996249-1997191
Length = 726
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 37 EMCSDACVSRATYVPTTRVGCENSVN 114
E C A S+ATY TT C N+ N
Sbjct: 263 ETCPGASASKATYACTTNTNCFNATN 288
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 623 PARFEHRCIAR-YECTWTSYPLGHDEATRSTRV 528
PA E+ C+ R Y+ TW S P+G DEA ++ +
Sbjct: 149 PALPEYSCLPRIYQDTWNSLPMG-DEAAQAVEL 180
>12_01_0340 -
2605770-2605916,2606353-2606595,2607260-2607531,
2607691-2607733,2607822-2607899,2608026-2608085,
2608272-2608331,2609440-2609577,2609655-2609767,
2610333-2610569,2610867-2610918
Length = 480
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 412 EIISCRMSWRQTACRQRCHAGETAPLSTSVRVRAHTNSA--TRVLRVASSWP 561
++ + R +QTA H G T P ST+ T +A L + SWP
Sbjct: 73 QVATLRRRAQQTATTTTSHHGHTTPFSTAAAAATATATARPPATLDIFPSWP 124
>04_04_1106 -
30948626-30948724,30948841-30949176,30949231-30949353,
30949425-30949517,30949603-30949806,30949884-30950134,
30951011-30952391,30952737-30953174
Length = 974
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 405 PPGNNIVPYVV-AADSMPSAVPCGGDGTALDVCPCACAHQQCDACTAGSFVVA*RIR 572
PP +P AAD + +PCG G L V P A C C A V R+R
Sbjct: 60 PPRRKALPLPRGAADVRGARLPCGACGALLSV-PVGLARCACPICAAELAVDTARLR 115
>03_06_0583 +
34901636-34901721,34901805-34901902,34902029-34902167,
34902262-34902290,34902406-34902502,34902593-34902648,
34902759-34902866,34902988-34903044,34905585-34905679,
34905822-34905998,34906086-34906189,34906595-34906664,
34906774-34906833
Length = 391
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 692 SFTVEVNREHLLSTYFIRKNWYPPARFEHRCIARYECTWTSYP 564
SF E+N + L+ + PP +H CI WTS P
Sbjct: 282 SFVDEINDKELIELSSMLFGESPPTGDQHACIQALRDHWTSIP 324
>08_01_0719 + 6386831-6386984,6387344-6387499,6387513-6387838
Length = 211
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 426 PYVVAADSMPSAVPCGGDGTALDVCPCACAHQQCD-AC 536
PYV+A + +PS VP G L C QQ AC
Sbjct: 142 PYVIALEDLPSRVPAVPSGRCLMRCAGGTPTQQAQVAC 179
>01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162
Length = 708
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 331 ENSTARHPAPAPRGLTCVVAGSS-RAGYLRLDTLSPKE 221
E+S+A P P CV +GSS R G LD KE
Sbjct: 132 ESSSATSATPTPTPSECVSSGSSVRGGEAELDRADAKE 169
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 405 PPGNNIVPYVV-AADSMPSAVPCGGDGTALDVCPCACAHQQCDACTAGSFVVA*RIR 572
PP +P AAD+ + +PCG G L V P + C C A V R+R
Sbjct: 64 PPRRRALPLPRGAADARGARLPCGSCGELLSV-PVGLSRCACPLCGAELAVYPARLR 119
>01_06_0138 + 26865895-26865953,26866628-26867870
Length = 433
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +3
Query: 246 RRYPALELPATTQVSPRGAGAGCRAVLFSQNQY*CFENIFKNNITM*CKHLLAPPGNNIV 425
R++ LELP + S + C V F N ++ N IT CK +L PPG
Sbjct: 141 RKWYDLELPCIDK-SSCFVSSSCGLVCFMDNDSRNAISV-SNPITKDCKRILEPPGAKFP 198
Query: 426 PYVVAA 443
Y A
Sbjct: 199 DYSTIA 204
>01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285
Length = 546
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 592 DTNAPGRLIL*ATTKLPAVHASHCWCAHAHGQTSRAVPSPPHGTAD 455
D GR +L AT ++ ++ C +T A P PP G+ D
Sbjct: 97 DALPSGRFLLRATDGWYGLNGAYYICCDCDARTRVATPPPPSGSLD 142
>01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319
Length = 546
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 592 DTNAPGRLIL*ATTKLPAVHASHCWCAHAHGQTSRAVPSPPHGTAD 455
D GR +L AT ++ ++ C +T A P PP G+ D
Sbjct: 97 DALPSGRFLLRATDGWYGLNGAYYICCDCDARTRVATPPPPSGSLD 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,991,097
Number of Sequences: 37544
Number of extensions: 515983
Number of successful extensions: 1647
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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