Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0718
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31102| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_24844| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)                 29   2.7  
SB_4469| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)               29   4.8  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_55787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 28   8.4  

>SB_31102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 243 RRRYPALELPATTQVSPRGAGA 308
           +RR P L LPATT   P G+GA
Sbjct: 132 KRRLPQLPLPATTTPKPTGSGA 153


>SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 460 ADGMLSAATTYGTILFPGGANKCLHYIVMLFLKIFSKHQYWFWENS 323
           ADG L         +F     +CL  IV+ FL I     YWF + S
Sbjct: 311 ADGFLDVIRQQTESVFVSRFCRCLFVIVLSFLPILQALLYWFLKKS 356


>SB_24844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = +1

Query: 439 RQTACRQRCHAGETAPLSTSVRVRAHTNSATRVLRVASSWPKG*DVQVHSYRAMHRCSNL 618
           RQ A  Q              +   +  +AT+  R  +  P+  +VQ H   A   C+N 
Sbjct: 58  RQRATTQIPRKDNVQQHKCHAKTTCNNTNATQRQRATTQMPRKDNVQQHKCHAKTTCNNT 117

Query: 619 AGGY 630
            GGY
Sbjct: 118 KGGY 121


>SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)
          Length = 509

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 632 WYPPARFEHRCIARYECTWTSYPLGHDEATRSTRVALLVCARTRTDVESGAVSP 471
           W     F   C  +++C  TSY  G +++T   R+ +   + T  +    A+SP
Sbjct: 3   WNGEVEFRLTCKVKFDCNSTSYWAGAEKSTSPYRIIVDTISGTIKESFERAISP 56


>SB_4469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 481 APLSTSVRVRAHTNSATRVLRVASSWPKG*DVQVHSYRAM 600
           APL   VRV A + S+ RV R    W    D+++H+Y  M
Sbjct: 130 APLR-DVRVTAWSVSSYRVCRDVEGWGSRADIRIHAYPVM 168


>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
          Length = 1364

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 354 ENIFKNNITM*CKHLLAPPGNNIVPYVVAADSMPSAVPCGGDGTAL 491
           E +  N+  +  K LLA  GNN     +  D++P  + C   G+A+
Sbjct: 476 EGLGSNDAKIQFKSLLAIAGNNSDMINILKDALPRPIDCSNKGSAI 521


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 361  FSKITSLCNVNIYWRPPEIISC 426
            FS +T  CN+ +YW+ P + +C
Sbjct: 1118 FSSVTKACNLPLYWKQP-LFAC 1138


>SB_55787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -3

Query: 481 PSPPHGTADGMLSAATTYGTILFPGGANKCLHYIVMLFLKIFSKHQYWFWENST 320
           P  P G    +L   T + TI+  G  N+C   I   FL  F K     + NST
Sbjct: 118 PCGPKGLTKRLL-IGTKFNTIVGTGDVNECRETIKKAFLSEFDKRTGTPYVNST 170


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 391  NIYWRPPEIISCRMSWRQTACRQRCHAGETAPLST 495
            N  + PP   +C   W   AC   C  G   P+ +
Sbjct: 1343 NTSFDPPRCTNCSQGWMGQACEDLCVHGTQVPMDS 1377


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 470  AWHR*RHAVCRHDIRHDI 417
            AWHR RH + RH  RH +
Sbjct: 1385 AWHRIRHGLPRHRTRHGL 1402



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 470  AWHR*RHAVCRHDIRHDI 417
            AWHR RH + RH IR  +
Sbjct: 1421 AWHRTRHGLARHRIRQGL 1438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,751,997
Number of Sequences: 59808
Number of extensions: 556210
Number of successful extensions: 1643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)