Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0718
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-5|CAA94378.2|  527|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine rec...    29   4.2  
U23486-6|AAC46778.1|  124|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z70311-5|CAA94378.2|  527|Caenorhabditis elegans Hypothetical
           protein T25B9.7 protein.
          Length = 527

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = -3

Query: 511 HAHGQTSRA--VPSP---PHGTADGMLSAATTYGTILFPGG 404
           HA G  S+A  VP+P   P   + G+ S A+ YGT+L+P G
Sbjct: 148 HAGGVPSKASMVPTPLFQPQIVSAGLPSPASVYGTVLYPKG 188


>Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical
           protein T24F1.4 protein.
          Length = 149

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 373 TSLCNVNIYWRPPEIISCRMSWRQTACRQRCHAGETAPLSTSVRV 507
           T LCN + Y+ PP  ISC   +   +C ++   G T+     +R+
Sbjct: 53  TKLCNCHNYYSPPFCISCLPGYWGESCDRQPLKGVTSASDFPIRI 97


>U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein97 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 433 TYGTILFPGGANKCLHYIVMLFLKIFSKHQYWF 335
           T    +FP  ANK   Y ++L L+ F++   WF
Sbjct: 9   TTAEFMFPSHANKLELYRILLLLEQFARPSLWF 41


>U23486-6|AAC46778.1|  124|Caenorhabditis elegans Hypothetical
           protein F07F6.5 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 322 CYFPKTSIDASKIFSKITSLCNVNIYWRPPEIISCRMSWRQ---TACRQRCHAGETAP 486
           C F   + D SK+ S + + CNV+ Y    +  SC+M  R+     C+Q  H+  T P
Sbjct: 44  CVFNCLTEDVSKVLSCVATRCNVHCY--DGDCPSCKMISRRIFSNICKQ--HSMTTQP 97


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 418 ISCRMSWRQTACRQRCHAGETAP--LSTSVRVRAHTN 522
           ++C    +   CR++CH G   P  L+TSV  R  T+
Sbjct: 498 LTCGTPGKNHHCREKCHEGPCPPCNLNTSVICRCGTS 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,912,769
Number of Sequences: 27780
Number of extensions: 407044
Number of successful extensions: 1180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)