Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0718
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 163 VDIVFNSIFEGRLAS*YLRCSHIRHVSWV 77
           VD++F   F   L   Y+ C  +  VSWV
Sbjct: 233 VDLLFKREFSYYLIQIYIPCCMLVIVSWV 261


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 163 VDIVFNSIFEGRLAS*YLRCSHIRHVSWV 77
           VD++F   F   L   Y+ C  +  VSWV
Sbjct: 233 VDLLFKREFSYYLIQIYIPCCMLVIVSWV 261


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 16/69 (23%), Positives = 26/69 (37%)
 Frame = -3

Query: 589 TNAPGRLIL*ATTKLPAVHASHCWCAHAHGQTSRAVPSPPHGTADGMLSAATTYGTILFP 410
           T +P    L ++    AV A+    A  H   S    SP H  +    S A    + ++P
Sbjct: 31  TTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYP 90

Query: 409 GGANKCLHY 383
             +    H+
Sbjct: 91  YVSAAAAHH 99


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 361 FSKITSLCNVNIYWRPPEIISC 426
           F+  T +C  +  W P +I++C
Sbjct: 152 FTTYTPVCEYDHTWWPYDILNC 173


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 396 LLAPPGNNIVPYVVAADSMPSAVP 467
           +L PP +N V  V + D +  A+P
Sbjct: 434 ILTPPSSNPVSPVPSPDPLDLAIP 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,253
Number of Sequences: 438
Number of extensions: 4863
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)