Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0718
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta...    29   3.0  
At3g12750.1 68416.m01592 zinc transporter (ZIP1) identical to pu...    28   5.2  
At1g10280.1 68414.m01158 expressed protein contains Pfam profile...    28   5.2  
At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa...    27   9.0  

>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 347

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 472 PHGTAD-GMLS--AATTYGTILFPGGANKCLHYIVMLFLKIFSKHQYWFWENS 323
           PHG  + G ++  A +  G +LF G A+    Y+    L  FS   YW W+ S
Sbjct: 288 PHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEFSCRLYWIWDYS 340


>At3g12750.1 68416.m01592 zinc transporter (ZIP1) identical to
           putative zinc transporter GB:AAC24197 from [Arabidopsis
           thaliana], ( Proc. Natl. Acad. Sci. U.S.A. 95 (12),
           7220-7224 (1998)); member of the Zinc (Zn2+)-Iron (Fe2+)
           permease (ZIP) family, PMID:11500563
          Length = 355

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 608 HRCIARYECTWTSYPLGHDEATRSTRVAL 522
           H C A  +CT    P+  DEA ++T++ L
Sbjct: 24  HMCCASSDCTSHDDPVSQDEAEKATKLKL 52


>At1g10280.1 68414.m01158 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 412

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 1   VMYPSLHFVIF*EMCSDACVSRATYVPTTRVGCENSVNIKKQVSLQIWS 147
           ++  S ++ +F + C  AC     Y+PT       S+N  + V+   WS
Sbjct: 300 IISDSKYYSLFKQFCRPACYPDEHYIPTFLNMFHGSMNANRSVTWVDWS 348


>At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 369

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 358 FSKHQYWFWENSTARHPAPAPRGLTCVVAGSS 263
           FS  + W W N  ++ P   P     VV GSS
Sbjct: 315 FSVSKIWQWSNKRSKFPNNHPSETNLVVGGSS 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,126
Number of Sequences: 28952
Number of extensions: 370097
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)