Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0716
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)                  29   4.1  
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
          Length = 841

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 149 RENIARRDSVRDKVRTIDYTLNIFELIFFLYAVRAVC 259
           R+N   R S+R  VR +   + +F   + L A+R++C
Sbjct: 440 RQNSVNRRSIRSSVRVLGAMILLFVFCWVLSAIRSLC 476


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = -2

Query: 409 IESVSHKQRYVIGFVTIQLLISRANKETNLKWRRRMAITRSHSKLLLSLVAHGAYCIQ-- 236
           +  VSH  R  +     QL     +   NLK R+R +  RS  K L +  AH +  +   
Sbjct: 620 VTPVSHPDRIPLQMALTQL----ESLADNLKERKRESELRSRVKQLDTATAHLSKPLSSG 675

Query: 235 KKY---QFKYIKCIIYGSDFVAHTVSTRYV 155
            +Y   Q  +++C+I G D + HT   R +
Sbjct: 676 NRYFIRQDDFVQCVIEG-DTIVHTKRRRLI 704


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,021,240
Number of Sequences: 59808
Number of extensions: 310982
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)